Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10252 | 5' | -60.9 | NC_002686.1 | + | 107858 | 0.66 | 0.722851 |
Target: 5'- aCCUCGGGGCCcguGGGUCGCuuGGuCgACCGc -3' miRNA: 3'- -GGGGCCUUGG---CCCGGUG--CCuGaUGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 120296 | 0.66 | 0.722851 |
Target: 5'- aCCUCGGGGCCcguGGGUCGCuuGGuCgACCGc -3' miRNA: 3'- -GGGGCCUUGG---CCCGGUG--CCuGaUGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 121558 | 0.66 | 0.703683 |
Target: 5'- -gCCGGGcagaguGCaCGGGCCGCGGuaGCgGCCc -3' miRNA: 3'- ggGGCCU------UG-GCCCGGUGCC--UGaUGGc -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 122989 | 0.66 | 0.703683 |
Target: 5'- -aCCGGAACCGGaCCccgaaGCGGAgcCUAUCa -3' miRNA: 3'- ggGGCCUUGGCCcGG-----UGCCU--GAUGGc -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 123421 | 0.66 | 0.703683 |
Target: 5'- gCCCGGggUguuuaggaCGGGCC-CGGcGCacgGCCGc -3' miRNA: 3'- gGGGCCuuG--------GCCCGGuGCC-UGa--UGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 104734 | 0.66 | 0.703683 |
Target: 5'- gCCCGGggUguuuaggaCGGGCC-CGGcGCacgGCCGc -3' miRNA: 3'- gGGGCCuuG--------GCCCGGuGCC-UGa--UGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 105166 | 0.66 | 0.703683 |
Target: 5'- -aCCGGAACCGGaCCccgaaGCGGAgcCUAUCa -3' miRNA: 3'- ggGGCCUUGGCCcGG-----UGCCU--GAUGGc -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 106597 | 0.66 | 0.703683 |
Target: 5'- -gCCGGGcagaguGCaCGGGCCGCGGuaGCgGCCc -3' miRNA: 3'- ggGGCCU------UG-GCCCGGUGCC--UGaUGGc -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 123977 | 0.66 | 0.664739 |
Target: 5'- cCCCCGGuuuuuUCGGGaCC-CGGGagaggGCCGg -3' miRNA: 3'- -GGGGCCuu---GGCCC-GGuGCCUga---UGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 107112 | 0.69 | 0.518819 |
Target: 5'- uUCuuGGGuCCGGGUCAUGGAUUgAUCGa -3' miRNA: 3'- -GGggCCUuGGCCCGGUGCCUGA-UGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 121043 | 0.69 | 0.518819 |
Target: 5'- uUCuuGGGuCCGGGUCAUGGAUUgAUCGa -3' miRNA: 3'- -GGggCCUuGGCCCGGUGCCUGA-UGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 104161 | 0.76 | 0.201752 |
Target: 5'- aCCCGGGAgaGGGCCGgGGGggGCCGg -3' miRNA: 3'- gGGGCCUUggCCCGGUgCCUgaUGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 106967 | 1.09 | 0.001067 |
Target: 5'- uCCCCGGAACCGGGCCACGGACUACCGu -3' miRNA: 3'- -GGGGCCUUGGCCCGGUGCCUGAUGGC- -5' |
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10252 | 5' | -60.9 | NC_002686.1 | + | 121187 | 1.09 | 0.001067 |
Target: 5'- uCCCCGGAACCGGGCCACGGACUACCGu -3' miRNA: 3'- -GGGGCCUUGGCCCGGUGCCUGAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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