miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10252 5' -60.9 NC_002686.1 + 120296 0.66 0.722851
Target:  5'- aCCUCGGGGCCcguGGGUCGCuuGGuCgACCGc -3'
miRNA:   3'- -GGGGCCUUGG---CCCGGUG--CCuGaUGGC- -5'
10252 5' -60.9 NC_002686.1 + 107858 0.66 0.722851
Target:  5'- aCCUCGGGGCCcguGGGUCGCuuGGuCgACCGc -3'
miRNA:   3'- -GGGGCCUUGG---CCCGGUG--CCuGaUGGC- -5'
10252 5' -60.9 NC_002686.1 + 121558 0.66 0.703683
Target:  5'- -gCCGGGcagaguGCaCGGGCCGCGGuaGCgGCCc -3'
miRNA:   3'- ggGGCCU------UG-GCCCGGUGCC--UGaUGGc -5'
10252 5' -60.9 NC_002686.1 + 122989 0.66 0.703683
Target:  5'- -aCCGGAACCGGaCCccgaaGCGGAgcCUAUCa -3'
miRNA:   3'- ggGGCCUUGGCCcGG-----UGCCU--GAUGGc -5'
10252 5' -60.9 NC_002686.1 + 123421 0.66 0.703683
Target:  5'- gCCCGGggUguuuaggaCGGGCC-CGGcGCacgGCCGc -3'
miRNA:   3'- gGGGCCuuG--------GCCCGGuGCC-UGa--UGGC- -5'
10252 5' -60.9 NC_002686.1 + 106597 0.66 0.703683
Target:  5'- -gCCGGGcagaguGCaCGGGCCGCGGuaGCgGCCc -3'
miRNA:   3'- ggGGCCU------UG-GCCCGGUGCC--UGaUGGc -5'
10252 5' -60.9 NC_002686.1 + 105166 0.66 0.703683
Target:  5'- -aCCGGAACCGGaCCccgaaGCGGAgcCUAUCa -3'
miRNA:   3'- ggGGCCUUGGCCcGG-----UGCCU--GAUGGc -5'
10252 5' -60.9 NC_002686.1 + 104734 0.66 0.703683
Target:  5'- gCCCGGggUguuuaggaCGGGCC-CGGcGCacgGCCGc -3'
miRNA:   3'- gGGGCCuuG--------GCCCGGuGCC-UGa--UGGC- -5'
10252 5' -60.9 NC_002686.1 + 123977 0.66 0.664739
Target:  5'- cCCCCGGuuuuuUCGGGaCC-CGGGagaggGCCGg -3'
miRNA:   3'- -GGGGCCuu---GGCCC-GGuGCCUga---UGGC- -5'
10252 5' -60.9 NC_002686.1 + 121043 0.69 0.518819
Target:  5'- uUCuuGGGuCCGGGUCAUGGAUUgAUCGa -3'
miRNA:   3'- -GGggCCUuGGCCCGGUGCCUGA-UGGC- -5'
10252 5' -60.9 NC_002686.1 + 107112 0.69 0.518819
Target:  5'- uUCuuGGGuCCGGGUCAUGGAUUgAUCGa -3'
miRNA:   3'- -GGggCCUuGGCCCGGUGCCUGA-UGGC- -5'
10252 5' -60.9 NC_002686.1 + 104161 0.76 0.201752
Target:  5'- aCCCGGGAgaGGGCCGgGGGggGCCGg -3'
miRNA:   3'- gGGGCCUUggCCCGGUgCCUgaUGGC- -5'
10252 5' -60.9 NC_002686.1 + 106967 1.09 0.001067
Target:  5'- uCCCCGGAACCGGGCCACGGACUACCGu -3'
miRNA:   3'- -GGGGCCUUGGCCCGGUGCCUGAUGGC- -5'
10252 5' -60.9 NC_002686.1 + 121187 1.09 0.001067
Target:  5'- uCCCCGGAACCGGGCCACGGACUACCGu -3'
miRNA:   3'- -GGGGCCUUGGCCCGGUGCCUGAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.