miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10254 3' -52.6 NC_002686.1 + 122894 0.66 0.976549
Target:  5'- cCCGUcuaccUCCCCgagGGCCGcaggcccggCAGCg -3'
miRNA:   3'- -GGCAc----AGGGGa--CCGGCuauaaa---GUCG- -5'
10254 3' -52.6 NC_002686.1 + 105260 0.66 0.976549
Target:  5'- cCCGUcuaccUCCCCgagGGCCGcaggcccggCAGCg -3'
miRNA:   3'- -GGCAc----AGGGGa--CCGGCuauaaa---GUCG- -5'
10254 3' -52.6 NC_002686.1 + 105046 0.66 0.963468
Target:  5'- gCGUGUCugcaaaacaCCCUGGCCcacag--CGGCa -3'
miRNA:   3'- gGCACAG---------GGGACCGGcuauaaaGUCG- -5'
10254 3' -52.6 NC_002686.1 + 123109 0.66 0.963468
Target:  5'- gCGUGUCugcaaaacaCCCUGGCCcacag--CGGCa -3'
miRNA:   3'- gGCACAG---------GGGACCGGcuauaaaGUCG- -5'
10254 3' -52.6 NC_002686.1 + 106284 0.67 0.952056
Target:  5'- gCGcGUCUCUUGGCCGccuuaaCAGCg -3'
miRNA:   3'- gGCaCAGGGGACCGGCuauaaaGUCG- -5'
10254 3' -52.6 NC_002686.1 + 121871 0.67 0.952056
Target:  5'- gCGcGUCUCUUGGCCGccuuaaCAGCg -3'
miRNA:   3'- gGCaCAGGGGACCGGCuauaaaGUCG- -5'
10254 3' -52.6 NC_002686.1 + 122144 1.11 0.00401
Target:  5'- gCGUGUCCCCUGGCCGAUAUUUCAGCa -3'
miRNA:   3'- gGCACAGGGGACCGGCUAUAAAGUCG- -5'
10254 3' -52.6 NC_002686.1 + 106010 1.15 0.002267
Target:  5'- gCCGUGUCCCCUGGCCGAUAUUUCAGCa -3'
miRNA:   3'- -GGCACAGGGGACCGGCUAUAAAGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.