Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10254 | 3' | -52.6 | NC_002686.1 | + | 122894 | 0.66 | 0.976549 |
Target: 5'- cCCGUcuaccUCCCCgagGGCCGcaggcccggCAGCg -3' miRNA: 3'- -GGCAc----AGGGGa--CCGGCuauaaa---GUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 105260 | 0.66 | 0.976549 |
Target: 5'- cCCGUcuaccUCCCCgagGGCCGcaggcccggCAGCg -3' miRNA: 3'- -GGCAc----AGGGGa--CCGGCuauaaa---GUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 105046 | 0.66 | 0.963468 |
Target: 5'- gCGUGUCugcaaaacaCCCUGGCCcacag--CGGCa -3' miRNA: 3'- gGCACAG---------GGGACCGGcuauaaaGUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 123109 | 0.66 | 0.963468 |
Target: 5'- gCGUGUCugcaaaacaCCCUGGCCcacag--CGGCa -3' miRNA: 3'- gGCACAG---------GGGACCGGcuauaaaGUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 106284 | 0.67 | 0.952056 |
Target: 5'- gCGcGUCUCUUGGCCGccuuaaCAGCg -3' miRNA: 3'- gGCaCAGGGGACCGGCuauaaaGUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 121871 | 0.67 | 0.952056 |
Target: 5'- gCGcGUCUCUUGGCCGccuuaaCAGCg -3' miRNA: 3'- gGCaCAGGGGACCGGCuauaaaGUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 122144 | 1.11 | 0.00401 |
Target: 5'- gCGUGUCCCCUGGCCGAUAUUUCAGCa -3' miRNA: 3'- gGCACAGGGGACCGGCUAUAAAGUCG- -5' |
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10254 | 3' | -52.6 | NC_002686.1 | + | 106010 | 1.15 | 0.002267 |
Target: 5'- gCCGUGUCCCCUGGCCGAUAUUUCAGCa -3' miRNA: 3'- -GGCACAGGGGACCGGCUAUAAAGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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