miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10256 5' -57 NC_002686.1 + 106463 0.67 0.774804
Target:  5'- uGAGGUgGUCgccgccggcGGCGACGGCCc-CGCu -3'
miRNA:   3'- gCUCCGgUAGa--------CUGUUGCCGGacGCG- -5'
10256 5' -57 NC_002686.1 + 121692 0.67 0.774804
Target:  5'- uGAGGUgGUCgccgccggcGGCGACGGCCc-CGCu -3'
miRNA:   3'- gCUCCGgUAGa--------CUGUUGCCGGacGCG- -5'
10256 5' -57 NC_002686.1 + 59599 0.68 0.736289
Target:  5'- cCGAGuaCuacCUGAcCAACGGCCUGUcccGCa -3'
miRNA:   3'- -GCUCcgGua-GACU-GUUGCCGGACG---CG- -5'
10256 5' -57 NC_002686.1 + 104544 0.7 0.593765
Target:  5'- aCGAGGacauccacuCCAUCUucaccGGCGcGCGGCCgUGCGCc -3'
miRNA:   3'- -GCUCC---------GGUAGA-----CUGU-UGCCGG-ACGCG- -5'
10256 5' -57 NC_002686.1 + 123611 0.7 0.593765
Target:  5'- aCGAGGacauccacuCCAUCUucaccGGCGcGCGGCCgUGCGCc -3'
miRNA:   3'- -GCUCC---------GGUAGA-----CUGU-UGCCGG-ACGCG- -5'
10256 5' -57 NC_002686.1 + 106438 0.71 0.5531
Target:  5'- cCGGGGCCG-CU-ACcGCGGCCcGUGCa -3'
miRNA:   3'- -GCUCCGGUaGAcUGuUGCCGGaCGCG- -5'
10256 5' -57 NC_002686.1 + 121717 0.71 0.5531
Target:  5'- cCGGGGCCG-CU-ACcGCGGCCcGUGCa -3'
miRNA:   3'- -GCUCCGGUaGAcUGuUGCCGGaCGCG- -5'
10256 5' -57 NC_002686.1 + 105606 0.71 0.543055
Target:  5'- uGAGGCCgGUCUGGCAagaGCGGUgUuuGCa -3'
miRNA:   3'- gCUCCGG-UAGACUGU---UGCCGgAcgCG- -5'
10256 5' -57 NC_002686.1 + 122549 0.71 0.543055
Target:  5'- uGAGGCCgGUCUGGCAagaGCGGUgUuuGCa -3'
miRNA:   3'- gCUCCGG-UAGACUGU---UGCCGgAcgCG- -5'
10256 5' -57 NC_002686.1 + 105638 0.72 0.49385
Target:  5'- gCGcAGGCCGUUgucaGAUGGCCUcGCGCa -3'
miRNA:   3'- -GC-UCCGGUAGacugUUGCCGGA-CGCG- -5'
10256 5' -57 NC_002686.1 + 122517 0.72 0.49385
Target:  5'- gCGcAGGCCGUUgucaGAUGGCCUcGCGCa -3'
miRNA:   3'- -GC-UCCGGUAGacugUUGCCGGA-CGCG- -5'
10256 5' -57 NC_002686.1 + 122666 1.12 0.001121
Target:  5'- gCGAGGCCAUCUGACAACGGCCUGCGCg -3'
miRNA:   3'- -GCUCCGGUAGACUGUUGCCGGACGCG- -5'
10256 5' -57 NC_002686.1 + 105489 1.12 0.001121
Target:  5'- gCGAGGCCAUCUGACAACGGCCUGCGCg -3'
miRNA:   3'- -GCUCCGGUAGACUGUUGCCGGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.