Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10256 | 5' | -57 | NC_002686.1 | + | 121692 | 0.67 | 0.774804 |
Target: 5'- uGAGGUgGUCgccgccggcGGCGACGGCCc-CGCu -3' miRNA: 3'- gCUCCGgUAGa--------CUGUUGCCGGacGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 106463 | 0.67 | 0.774804 |
Target: 5'- uGAGGUgGUCgccgccggcGGCGACGGCCc-CGCu -3' miRNA: 3'- gCUCCGgUAGa--------CUGUUGCCGGacGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 59599 | 0.68 | 0.736289 |
Target: 5'- cCGAGuaCuacCUGAcCAACGGCCUGUcccGCa -3' miRNA: 3'- -GCUCcgGua-GACU-GUUGCCGGACG---CG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 104544 | 0.7 | 0.593765 |
Target: 5'- aCGAGGacauccacuCCAUCUucaccGGCGcGCGGCCgUGCGCc -3' miRNA: 3'- -GCUCC---------GGUAGA-----CUGU-UGCCGG-ACGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 123611 | 0.7 | 0.593765 |
Target: 5'- aCGAGGacauccacuCCAUCUucaccGGCGcGCGGCCgUGCGCc -3' miRNA: 3'- -GCUCC---------GGUAGA-----CUGU-UGCCGG-ACGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 106438 | 0.71 | 0.5531 |
Target: 5'- cCGGGGCCG-CU-ACcGCGGCCcGUGCa -3' miRNA: 3'- -GCUCCGGUaGAcUGuUGCCGGaCGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 121717 | 0.71 | 0.5531 |
Target: 5'- cCGGGGCCG-CU-ACcGCGGCCcGUGCa -3' miRNA: 3'- -GCUCCGGUaGAcUGuUGCCGGaCGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 122549 | 0.71 | 0.543055 |
Target: 5'- uGAGGCCgGUCUGGCAagaGCGGUgUuuGCa -3' miRNA: 3'- gCUCCGG-UAGACUGU---UGCCGgAcgCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 105606 | 0.71 | 0.543055 |
Target: 5'- uGAGGCCgGUCUGGCAagaGCGGUgUuuGCa -3' miRNA: 3'- gCUCCGG-UAGACUGU---UGCCGgAcgCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 122517 | 0.72 | 0.49385 |
Target: 5'- gCGcAGGCCGUUgucaGAUGGCCUcGCGCa -3' miRNA: 3'- -GC-UCCGGUAGacugUUGCCGGA-CGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 105638 | 0.72 | 0.49385 |
Target: 5'- gCGcAGGCCGUUgucaGAUGGCCUcGCGCa -3' miRNA: 3'- -GC-UCCGGUAGacugUUGCCGGA-CGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 105489 | 1.12 | 0.001121 |
Target: 5'- gCGAGGCCAUCUGACAACGGCCUGCGCg -3' miRNA: 3'- -GCUCCGGUAGACUGUUGCCGGACGCG- -5' |
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10256 | 5' | -57 | NC_002686.1 | + | 122666 | 1.12 | 0.001121 |
Target: 5'- gCGAGGCCAUCUGACAACGGCCUGCGCg -3' miRNA: 3'- -GCUCCGGUAGACUGUUGCCGGACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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