miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10257 3' -57.4 NC_002686.1 + 105339 0.66 0.845663
Target:  5'- gGGGGCGGCGGAcUUCGUugaCGAugcGGCa -3'
miRNA:   3'- -CCCUGUCGCCUuGGGCGcaaGCU---CCG- -5'
10257 3' -57.4 NC_002686.1 + 122815 0.66 0.845663
Target:  5'- gGGGGCGGCGGAcUUCGUugaCGAugcGGCa -3'
miRNA:   3'- -CCCUGUCGCCUuGGGCGcaaGCU---CCG- -5'
10257 3' -57.4 NC_002686.1 + 104785 0.66 0.837633
Target:  5'- aGGGCcGCGGGuGCCCGgcucguCGUaCGGGGUg -3'
miRNA:   3'- cCCUGuCGCCU-UGGGC------GCAaGCUCCG- -5'
10257 3' -57.4 NC_002686.1 + 123370 0.66 0.837633
Target:  5'- aGGGCcGCGGGuGCCCGgcucguCGUaCGGGGUg -3'
miRNA:   3'- cCCUGuCGCCU-UGGGC------GCAaGCUCCG- -5'
10257 3' -57.4 NC_002686.1 + 286 0.66 0.829419
Target:  5'- cGGGCGGUGGGuAgCCGCGgacauGGCg -3'
miRNA:   3'- cCCUGUCGCCU-UgGGCGCaagcuCCG- -5'
10257 3' -57.4 NC_002686.1 + 117244 0.67 0.803756
Target:  5'- aGGG-UAGCaGGAACCCGgGUUgaCGGguucGGCc -3'
miRNA:   3'- -CCCuGUCG-CCUUGGGCgCAA--GCU----CCG- -5'
10257 3' -57.4 NC_002686.1 + 110911 0.67 0.803756
Target:  5'- aGGG-UAGCaGGAACCCGgGUUgaCGGguucGGCc -3'
miRNA:   3'- -CCCuGUCG-CCUUGGGCgCAA--GCU----CCG- -5'
10257 3' -57.4 NC_002686.1 + 104407 0.68 0.742805
Target:  5'- gGGGugGGCGGGuccgccaaucgggggGCCggguggaGUGggCGGGGCc -3'
miRNA:   3'- -CCCugUCGCCU---------------UGGg------CGCaaGCUCCG- -5'
10257 3' -57.4 NC_002686.1 + 123072 0.68 0.738953
Target:  5'- cGGACGGUcucGGACCCGCGcugCcGGGCc -3'
miRNA:   3'- cCCUGUCGc--CUUGGGCGCaa-GcUCCG- -5'
10257 3' -57.4 NC_002686.1 + 105083 0.68 0.738953
Target:  5'- cGGACGGUcucGGACCCGCGcugCcGGGCc -3'
miRNA:   3'- cCCUGUCGc--CUUGGGCGCaa-GcUCCG- -5'
10257 3' -57.4 NC_002686.1 + 123150 0.68 0.709636
Target:  5'- uGGGGgA-UGGAACCCGUcugguGUUCG-GGCa -3'
miRNA:   3'- -CCCUgUcGCCUUGGGCG-----CAAGCuCCG- -5'
10257 3' -57.4 NC_002686.1 + 105005 0.68 0.709636
Target:  5'- uGGGGgA-UGGAACCCGUcugguGUUCG-GGCa -3'
miRNA:   3'- -CCCUgUcGCCUUGGGCG-----CAAGCuCCG- -5'
10257 3' -57.4 NC_002686.1 + 1208 0.7 0.63938
Target:  5'- cGGGGCAuGUGaGGCCgGCGUguUgGGGGCg -3'
miRNA:   3'- -CCCUGU-CGCcUUGGgCGCA--AgCUCCG- -5'
10257 3' -57.4 NC_002686.1 + 123805 0.71 0.539087
Target:  5'- gGGGGCcGCGGGugGCUgGCGgaCGAGGg -3'
miRNA:   3'- -CCCUGuCGCCU--UGGgCGCaaGCUCCg -5'
10257 3' -57.4 NC_002686.1 + 104349 0.71 0.539087
Target:  5'- gGGGGCcGCGGGugGCUgGCGgaCGAGGg -3'
miRNA:   3'- -CCCUGuCGCCU--UGGgCGCaaGCUCCg -5'
10257 3' -57.4 NC_002686.1 + 120300 0.72 0.50991
Target:  5'- gGGGACcuCGGGGCCCGUGggUCGcuuGGUc -3'
miRNA:   3'- -CCCUGucGCCUUGGGCGCa-AGCu--CCG- -5'
10257 3' -57.4 NC_002686.1 + 107854 0.72 0.50991
Target:  5'- gGGGACcuCGGGGCCCGUGggUCGcuuGGUc -3'
miRNA:   3'- -CCCUGucGCCUUGGGCGCa-AGCu--CCG- -5'
10257 3' -57.4 NC_002686.1 + 105295 1.12 0.001236
Target:  5'- gGGGACAGCGGAACCCGCGUUCGAGGCc -3'
miRNA:   3'- -CCCUGUCGCCUUGGGCGCAAGCUCCG- -5'
10257 3' -57.4 NC_002686.1 + 122860 1.12 0.001236
Target:  5'- gGGGACAGCGGAACCCGCGUUCGAGGCc -3'
miRNA:   3'- -CCCUGUCGCCUUGGGCGCAAGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.