miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10257 5' -52.9 NC_002686.1 + 117008 0.66 0.964059
Target:  5'- gCCGCCcgauaaguUGUGuauACGCGCGUUCGUGUa- -3'
miRNA:   3'- -GGUGGu-------GCAU---UGUGUGCAAGCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 111147 0.66 0.964059
Target:  5'- gCCGCCcgauaaguUGUGuauACGCGCGUUCGUGUa- -3'
miRNA:   3'- -GGUGGu-------GCAU---UGUGUGCAAGCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 118060 0.67 0.952892
Target:  5'- gCGCCACGcuuGCGgACGUUgCGCGUa- -3'
miRNA:   3'- gGUGGUGCau-UGUgUGCAA-GCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 110095 0.67 0.952892
Target:  5'- gCGCCACGcuuGCGgACGUUgCGCGUa- -3'
miRNA:   3'- gGUGGUGCau-UGUgUGCAA-GCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 46171 0.68 0.934681
Target:  5'- aCACUGCGauucagaACAUGUaaaUCGCGCCGu -3'
miRNA:   3'- gGUGGUGCauug---UGUGCA---AGCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 45659 0.68 0.934681
Target:  5'- aCACaACGUAACGCugguuggauCGUUUGCGCgGc -3'
miRNA:   3'- gGUGgUGCAUUGUGu--------GCAAGCGCGgC- -5'
10257 5' -52.9 NC_002686.1 + 104564 0.68 0.924106
Target:  5'- uUCACCG----GCGCGCGgccgUGCGCCGg -3'
miRNA:   3'- -GGUGGUgcauUGUGUGCaa--GCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 123591 0.68 0.924106
Target:  5'- uUCACCG----GCGCGCGgccgUGCGCCGg -3'
miRNA:   3'- -GGUGGUgcauUGUGUGCaa--GCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 96988 0.69 0.893368
Target:  5'- -aGCCACGUuguaguuacCGCACGUUUGCGUa- -3'
miRNA:   3'- ggUGGUGCAuu-------GUGUGCAAGCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 42986 0.69 0.879399
Target:  5'- aUACUACGUcAgGCAUGUUUGCGCa- -3'
miRNA:   3'- gGUGGUGCAuUgUGUGCAAGCGCGgc -5'
10257 5' -52.9 NC_002686.1 + 104736 0.7 0.847967
Target:  5'- aCGCCcgggguguuuaggACGggcccGGCGCACGgccgCGCGCCGg -3'
miRNA:   3'- gGUGG-------------UGCa----UUGUGUGCaa--GCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 123419 0.7 0.847967
Target:  5'- aCGCCcgggguguuuaggACGggcccGGCGCACGgccgCGCGCCGg -3'
miRNA:   3'- gGUGG-------------UGCa----UUGUGUGCaa--GCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 84235 0.73 0.71954
Target:  5'- aCGCCGCGUGuuucaaugucacGCACuACGUUaugGCGCCa -3'
miRNA:   3'- gGUGGUGCAU------------UGUG-UGCAAg--CGCGGc -5'
10257 5' -52.9 NC_002686.1 + 105334 1.1 0.004688
Target:  5'- gCCACCACGUAACACACGUUCGCGCCGc -3'
miRNA:   3'- -GGUGGUGCAUUGUGUGCAAGCGCGGC- -5'
10257 5' -52.9 NC_002686.1 + 122821 1.1 0.004688
Target:  5'- gCCACCACGUAACACACGUUCGCGCCGc -3'
miRNA:   3'- -GGUGGUGCAUUGUGUGCAAGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.