miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10259 5' -57.1 NC_002686.1 + 123200 0.66 0.861002
Target:  5'- gACGGugAag--GCGCAgCCCCGgguUGCGGa -3'
miRNA:   3'- -UGCCugUgcuaCGCGU-GGGGC---AUGCU- -5'
10259 5' -57.1 NC_002686.1 + 104955 0.66 0.861002
Target:  5'- gACGGugAag--GCGCAgCCCCGgguUGCGGa -3'
miRNA:   3'- -UGCCugUgcuaCGCGU-GGGGC---AUGCU- -5'
10259 5' -57.1 NC_002686.1 + 121353 0.66 0.828979
Target:  5'- gACGGccguaACugGAaGCGUugcauGCCCCGUACc- -3'
miRNA:   3'- -UGCC-----UGugCUaCGCG-----UGGGGCAUGcu -5'
10259 5' -57.1 NC_002686.1 + 106802 0.66 0.828979
Target:  5'- gACGGccguaACugGAaGCGUugcauGCCCCGUACc- -3'
miRNA:   3'- -UGCC-----UGugCUaCGCG-----UGGGGCAUGcu -5'
10259 5' -57.1 NC_002686.1 + 122427 0.66 0.82051
Target:  5'- cUGGACGCGGUugcaccugaGCGaugGCCCCGagACGGa -3'
miRNA:   3'- uGCCUGUGCUA---------CGCg--UGGGGCa-UGCU- -5'
10259 5' -57.1 NC_002686.1 + 105728 0.66 0.82051
Target:  5'- cUGGACGCGGUugcaccugaGCGaugGCCCCGagACGGa -3'
miRNA:   3'- uGCCUGUGCUA---------CGCg--UGGGGCa-UGCU- -5'
10259 5' -57.1 NC_002686.1 + 109261 0.69 0.708036
Target:  5'- gACGGGCAUuuUGCGUuuauacauCCCCGUuuACGGg -3'
miRNA:   3'- -UGCCUGUGcuACGCGu-------GGGGCA--UGCU- -5'
10259 5' -57.1 NC_002686.1 + 118894 0.69 0.708036
Target:  5'- gACGGGCAUuuUGCGUuuauacauCCCCGUuuACGGg -3'
miRNA:   3'- -UGCCUGUGcuACGCGu-------GGGGCA--UGCU- -5'
10259 5' -57.1 NC_002686.1 + 110868 0.71 0.555998
Target:  5'- aGCGGACGCGuucucgGCGUAUa-CGUGCGAg -3'
miRNA:   3'- -UGCCUGUGCua----CGCGUGggGCAUGCU- -5'
10259 5' -57.1 NC_002686.1 + 117286 0.71 0.555998
Target:  5'- aGCGGACGCGuucucgGCGUAUa-CGUGCGAg -3'
miRNA:   3'- -UGCCUGUGCua----CGCGUGggGCAUGCU- -5'
10259 5' -57.1 NC_002686.1 + 122872 0.72 0.516459
Target:  5'- -gGGACugG--GCGCGCCCC-UGCGAc -3'
miRNA:   3'- ugCCUGugCuaCGCGUGGGGcAUGCU- -5'
10259 5' -57.1 NC_002686.1 + 105282 0.72 0.516459
Target:  5'- -gGGACugG--GCGCGCCCC-UGCGAc -3'
miRNA:   3'- ugCCUGugCuaCGCGUGGGGcAUGCU- -5'
10259 5' -57.1 NC_002686.1 + 104614 1.08 0.002322
Target:  5'- gACGGACACGAUGCGCACCCCGUACGAc -3'
miRNA:   3'- -UGCCUGUGCUACGCGUGGGGCAUGCU- -5'
10259 5' -57.1 NC_002686.1 + 123541 1.08 0.002322
Target:  5'- gACGGACACGAUGCGCACCCCGUACGAc -3'
miRNA:   3'- -UGCCUGUGCUACGCGUGGGGCAUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.