miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10260 5' -43.5 NC_002686.1 + 36986 0.66 0.999999
Target:  5'- ----cUUUGGUAGgagaGGCAcaaACCGCUGGg -3'
miRNA:   3'- gaauaAAAUCGUCg---UUGU---UGGCGAUC- -5'
10260 5' -43.5 NC_002686.1 + 112867 0.66 0.999999
Target:  5'- -------gGGCAGguACAAUUGCUAc -3'
miRNA:   3'- gaauaaaaUCGUCguUGUUGGCGAUc -5'
10260 5' -43.5 NC_002686.1 + 18147 0.66 0.999998
Target:  5'- -cUGUUc---CAGUuGCAACCGCUGGa -3'
miRNA:   3'- gaAUAAaaucGUCGuUGUUGGCGAUC- -5'
10260 5' -43.5 NC_002686.1 + 47800 0.66 0.999997
Target:  5'- --------cGCGGCAuUAACUGCUGGu -3'
miRNA:   3'- gaauaaaauCGUCGUuGUUGGCGAUC- -5'
10260 5' -43.5 NC_002686.1 + 43628 0.66 0.999996
Target:  5'- ------cUAGCGGCAGCGGCaGCa-- -3'
miRNA:   3'- gaauaaaAUCGUCGUUGUUGgCGauc -5'
10260 5' -43.5 NC_002686.1 + 103632 0.68 0.999966
Target:  5'- ------gUGGaAGCGACGcuGCCGCUAGu -3'
miRNA:   3'- gaauaaaAUCgUCGUUGU--UGGCGAUC- -5'
10260 5' -43.5 NC_002686.1 + 121707 0.69 0.99974
Target:  5'- -------cGGCGGCGACGGCCccGCUGu -3'
miRNA:   3'- gaauaaaaUCGUCGUUGUUGG--CGAUc -5'
10260 5' -43.5 NC_002686.1 + 106448 0.69 0.99974
Target:  5'- -------cGGCGGCGACGGCCccGCUGu -3'
miRNA:   3'- gaauaaaaUCGUCGUUGUUGG--CGAUc -5'
10260 5' -43.5 NC_002686.1 + 106027 0.7 0.999665
Target:  5'- -aUAUUU---CAGCAACGGCCGCcGGa -3'
miRNA:   3'- gaAUAAAaucGUCGUUGUUGGCGaUC- -5'
10260 5' -43.5 NC_002686.1 + 122128 0.7 0.999665
Target:  5'- -aUAUUU---CAGCAACGGCCGCcGGa -3'
miRNA:   3'- gaAUAAAaucGUCGUUGUUGGCGaUC- -5'
10260 5' -43.5 NC_002686.1 + 36375 0.7 0.999571
Target:  5'- -gUAUUUUuaaAGCGGCAACCGCa-- -3'
miRNA:   3'- gaAUAAAAucgUCGUUGUUGGCGauc -5'
10260 5' -43.5 NC_002686.1 + 108247 0.71 0.998382
Target:  5'- --cGUUcu-GCGGCGGCAGCCGCc-- -3'
miRNA:   3'- gaaUAAaauCGUCGUUGUUGGCGauc -5'
10260 5' -43.5 NC_002686.1 + 119908 0.71 0.998382
Target:  5'- --cGUUcu-GCGGCGGCAGCCGCc-- -3'
miRNA:   3'- gaaUAAaauCGUCGUUGUUGGCGauc -5'
10260 5' -43.5 NC_002686.1 + 112520 0.71 0.998028
Target:  5'- ------cUGGCAGUGGCAcauACCGCUAa -3'
miRNA:   3'- gaauaaaAUCGUCGUUGU---UGGCGAUc -5'
10260 5' -43.5 NC_002686.1 + 67265 0.73 0.994274
Target:  5'- ------aUAGCAGCAcgauuaGCAACUGCUAu -3'
miRNA:   3'- gaauaaaAUCGUCGU------UGUUGGCGAUc -5'
10260 5' -43.5 NC_002686.1 + 38638 0.74 0.990906
Target:  5'- -----cUUAGCAGCGACAACgGUgGGg -3'
miRNA:   3'- gaauaaAAUCGUCGUUGUUGgCGaUC- -5'
10260 5' -43.5 NC_002686.1 + 18031 1.11 0.027387
Target:  5'- aCUUAUUUUAGCAGCAACAACCGCUAGu -3'
miRNA:   3'- -GAAUAAAAUCGUCGUUGUUGGCGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.