miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10263 5' -55 NC_002686.1 + 105577 0.65 0.90036
Target:  5'- -gGCCAucgcuCAGGugCaACCGCGUCCAGg -3'
miRNA:   3'- aaUGGUu----GUUCugGgUGGCGUGGGUC- -5'
10263 5' -55 NC_002686.1 + 60909 0.65 0.90036
Target:  5'- aUACUAAUGAGACaaCugCGCAaauCCCAGu -3'
miRNA:   3'- aAUGGUUGUUCUGg-GugGCGU---GGGUC- -5'
10263 5' -55 NC_002686.1 + 122578 0.65 0.90036
Target:  5'- -gGCCAucgcuCAGGugCaACCGCGUCCAGg -3'
miRNA:   3'- aaUGGUu----GUUCugGgUGGCGUGGGUC- -5'
10263 5' -55 NC_002686.1 + 104481 0.66 0.893624
Target:  5'- -cGCCccCGGGgggcuccgcuucGCCCACCGCGCCUu- -3'
miRNA:   3'- aaUGGuuGUUC------------UGGGUGGCGUGGGuc -5'
10263 5' -55 NC_002686.1 + 123674 0.66 0.893624
Target:  5'- -cGCCccCGGGgggcuccgcuucGCCCACCGCGCCUu- -3'
miRNA:   3'- aaUGGuuGUUC------------UGGGUGGCGUGGGuc -5'
10263 5' -55 NC_002686.1 + 104260 0.66 0.879421
Target:  5'- --cCCGAUuggcGGACCCGCC-CACCCc- -3'
miRNA:   3'- aauGGUUGu---UCUGGGUGGcGUGGGuc -5'
10263 5' -55 NC_002686.1 + 123895 0.66 0.879421
Target:  5'- --cCCGAUuggcGGACCCGCC-CACCCc- -3'
miRNA:   3'- aauGGUUGu---UCUGGGUGGcGUGGGuc -5'
10263 5' -55 NC_002686.1 + 86049 0.66 0.864277
Target:  5'- -gACCAACGAGGCUgguaAUCGC-CCCGa -3'
miRNA:   3'- aaUGGUUGUUCUGGg---UGGCGuGGGUc -5'
10263 5' -55 NC_002686.1 + 74962 0.67 0.856367
Target:  5'- -aACCGAuucCAAGAUCCACgUGCGCUCGa -3'
miRNA:   3'- aaUGGUU---GUUCUGGGUG-GCGUGGGUc -5'
10263 5' -55 NC_002686.1 + 21820 0.67 0.856367
Target:  5'- -cAUCAAC-AGuCCagCACCGCACCCGa -3'
miRNA:   3'- aaUGGUUGuUCuGG--GUGGCGUGGGUc -5'
10263 5' -55 NC_002686.1 + 21724 0.67 0.856367
Target:  5'- -cAUCAAC-AGuCCagCACCGCACCCGa -3'
miRNA:   3'- aaUGGUUGuUCuGG--GUGGCGUGGGUc -5'
10263 5' -55 NC_002686.1 + 94555 0.67 0.831362
Target:  5'- aUACCAcgcguGCAGGAUCCGCUGCuuCUCGu -3'
miRNA:   3'- aAUGGU-----UGUUCUGGGUGGCGu-GGGUc -5'
10263 5' -55 NC_002686.1 + 121917 0.68 0.795353
Target:  5'- -gGCUAGgGAGucCCCACUGUcCCCAGa -3'
miRNA:   3'- aaUGGUUgUUCu-GGGUGGCGuGGGUC- -5'
10263 5' -55 NC_002686.1 + 106238 0.68 0.795353
Target:  5'- -gGCUAGgGAGucCCCACUGUcCCCAGa -3'
miRNA:   3'- aaUGGUUgUUCu-GGGUGGCGuGGGUC- -5'
10263 5' -55 NC_002686.1 + 80990 0.68 0.76666
Target:  5'- gUUGCCAACaAAGACCCAacguguuuucuuCCguaacacucgcuGCACCCAu -3'
miRNA:   3'- -AAUGGUUG-UUCUGGGU------------GG------------CGUGGGUc -5'
10263 5' -55 NC_002686.1 + 64408 0.7 0.685261
Target:  5'- gUUACCGACAAGGCa-ACCGCAUuaCCAc -3'
miRNA:   3'- -AAUGGUUGUUCUGggUGGCGUG--GGUc -5'
10263 5' -55 NC_002686.1 + 36413 0.7 0.66424
Target:  5'- uUUGCCAACAccACCCcuucCCGC-CCCGGa -3'
miRNA:   3'- -AAUGGUUGUucUGGGu---GGCGuGGGUC- -5'
10263 5' -55 NC_002686.1 + 116734 0.72 0.579765
Target:  5'- -aACCGuguauCcAGACCCGCCGCACuCCGc -3'
miRNA:   3'- aaUGGUu----GuUCUGGGUGGCGUG-GGUc -5'
10263 5' -55 NC_002686.1 + 111421 0.72 0.579765
Target:  5'- -aACCGuguauCcAGACCCGCCGCACuCCGc -3'
miRNA:   3'- aaUGGUu----GuUCUGGGUGGCGUG-GGUc -5'
10263 5' -55 NC_002686.1 + 66689 1.07 0.003165
Target:  5'- gUUACCAACAAGACCCACCGCACCCAGg -3'
miRNA:   3'- -AAUGGUUGUUCUGGGUGGCGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.