miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10264 3' -44.3 NC_002686.1 + 53598 0.66 0.999998
Target:  5'- uCGC--UCCAGAUcccaCAUUAGGacaggaagcUCCAGCu -3'
miRNA:   3'- -GCGcaAGGUCUAa---GUAAUUU---------AGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 110873 0.66 0.999998
Target:  5'- aCGCGUUCuCGGcgUauacgugcgagcCGUUGGaacguccuuGUCCAGCu -3'
miRNA:   3'- -GCGCAAG-GUCuaA------------GUAAUU---------UAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 117281 0.66 0.999998
Target:  5'- aCGCGUUCuCGGcgUauacgugcgagcCGUUGGaacguccuuGUCCAGCu -3'
miRNA:   3'- -GCGCAAG-GUCuaA------------GUAAUU---------UAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 121955 0.66 0.999995
Target:  5'- gGCGUggcggCCGGuGUUaagGUUcGAUCCGGCg -3'
miRNA:   3'- gCGCAa----GGUC-UAAg--UAAuUUAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 72537 0.66 0.999994
Target:  5'- aGCGUUCCA---UCAUUAaacauuaacaaacauGAUuCCAGUa -3'
miRNA:   3'- gCGCAAGGUcuaAGUAAU---------------UUA-GGUCG- -5'
10264 3' -44.3 NC_002686.1 + 41306 0.66 0.999993
Target:  5'- aGUGUUCCcguuGGUaCAUauGGUUCAGCa -3'
miRNA:   3'- gCGCAAGGu---CUAaGUAauUUAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 76173 0.67 0.999979
Target:  5'- aGUGUuuuguauaaaaagUCCAGGggCGUUAAAUCCcacaccaacGGCu -3'
miRNA:   3'- gCGCA-------------AGGUCUaaGUAAUUUAGG---------UCG- -5'
10264 3' -44.3 NC_002686.1 + 118172 0.67 0.999962
Target:  5'- -aUGUUCCAGGU-CAUUGgaguguAAUCCGGg -3'
miRNA:   3'- gcGCAAGGUCUAaGUAAU------UUAGGUCg -5'
10264 3' -44.3 NC_002686.1 + 109983 0.67 0.999962
Target:  5'- -aUGUUCCAGGU-CAUUGgaguguAAUCCGGg -3'
miRNA:   3'- gcGCAAGGUCUAaGUAAU------UUAGGUCg -5'
10264 3' -44.3 NC_002686.1 + 113276 0.69 0.999559
Target:  5'- uCGgGUUCCGGGUUUAcgAGAcguuuUCUGGCa -3'
miRNA:   3'- -GCgCAAGGUCUAAGUaaUUU-----AGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 1701 0.7 0.999131
Target:  5'- -cCGUcCCAGAcaCGUUcAAUCCAGCg -3'
miRNA:   3'- gcGCAaGGUCUaaGUAAuUUAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 36176 0.72 0.994434
Target:  5'- gCGUGUUCCAuuUUCAacuacAAAUCCAGUu -3'
miRNA:   3'- -GCGCAAGGUcuAAGUaa---UUUAGGUCG- -5'
10264 3' -44.3 NC_002686.1 + 84301 1.15 0.015404
Target:  5'- aCGCGUUCCAGAUUCAUUAAAUCCAGCu -3'
miRNA:   3'- -GCGCAAGGUCUAAGUAAUUUAGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.