miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10283 5' -54 NC_002687.1 + 78469 0.66 0.993356
Target:  5'- cGUUCGCGAagucugcacGCCUGUGgaGGCgaaCgGGUUCa -3'
miRNA:   3'- -CAAGCGUU---------CGGAUAUg-CCG---GgCCAAG- -5'
10283 5' -54 NC_002687.1 + 268529 0.66 0.993356
Target:  5'- -cUUGCAGGaugaUGUACGGCgCCGGa-- -3'
miRNA:   3'- caAGCGUUCgg--AUAUGCCG-GGCCaag -5'
10283 5' -54 NC_002687.1 + 295374 0.66 0.993356
Target:  5'- --cCGCGAGCUguuugAUACcgguGGCCCGcGUUUc -3'
miRNA:   3'- caaGCGUUCGGa----UAUG----CCGGGC-CAAG- -5'
10283 5' -54 NC_002687.1 + 56874 0.66 0.992405
Target:  5'- --gCGCGuguauGCC---GCGGCgCCGGUUCc -3'
miRNA:   3'- caaGCGUu----CGGauaUGCCG-GGCCAAG- -5'
10283 5' -54 NC_002687.1 + 80993 0.66 0.992405
Target:  5'- aGUUCGuCAAGCCcaagagaGGCUCGGUc- -3'
miRNA:   3'- -CAAGC-GUUCGGauaug--CCGGGCCAag -5'
10283 5' -54 NC_002687.1 + 297664 0.66 0.992405
Target:  5'- -cUCGCGcGCCUcUGCGuGuCCCGGaUCc -3'
miRNA:   3'- caAGCGUuCGGAuAUGC-C-GGGCCaAG- -5'
10283 5' -54 NC_002687.1 + 329770 0.66 0.99135
Target:  5'- -aUCGCugcugcGCCgagGCGuGCCCGGUg- -3'
miRNA:   3'- caAGCGuu----CGGauaUGC-CGGGCCAag -5'
10283 5' -54 NC_002687.1 + 154997 0.67 0.987478
Target:  5'- --gCGguGGCCgacacaACGGCCUGGUg- -3'
miRNA:   3'- caaGCguUCGGaua---UGCCGGGCCAag -5'
10283 5' -54 NC_002687.1 + 292810 0.67 0.985927
Target:  5'- -aUCGCu-GCCgaaaGUGuCaGCCCGGUUCu -3'
miRNA:   3'- caAGCGuuCGGa---UAU-GcCGGGCCAAG- -5'
10283 5' -54 NC_002687.1 + 260565 0.67 0.985927
Target:  5'- cGUUCGC-AGCCUGUcucuCGGCCaacGUUUc -3'
miRNA:   3'- -CAAGCGuUCGGAUAu---GCCGGgc-CAAG- -5'
10283 5' -54 NC_002687.1 + 170745 0.67 0.980385
Target:  5'- -gUCGCGcGCCgguuCGuGCCCcGGUUCg -3'
miRNA:   3'- caAGCGUuCGGauauGC-CGGG-CCAAG- -5'
10283 5' -54 NC_002687.1 + 235910 0.68 0.973359
Target:  5'- -gUCGCAgAGCUUcggcaACGGCCUGGUcuUCa -3'
miRNA:   3'- caAGCGU-UCGGAua---UGCCGGGCCA--AG- -5'
10283 5' -54 NC_002687.1 + 319589 0.68 0.970656
Target:  5'- cGUUCGCGAGagaagcACGGCCUGGg-- -3'
miRNA:   3'- -CAAGCGUUCggaua-UGCCGGGCCaag -5'
10283 5' -54 NC_002687.1 + 299060 0.68 0.967761
Target:  5'- ---aGCGGGCCgccAUGCcaGCCUGGUUCg -3'
miRNA:   3'- caagCGUUCGGa--UAUGc-CGGGCCAAG- -5'
10283 5' -54 NC_002687.1 + 92724 0.69 0.961376
Target:  5'- -gUCGguGGCaCgggGUugGGCCUGGUa- -3'
miRNA:   3'- caAGCguUCG-Ga--UAugCCGGGCCAag -5'
10283 5' -54 NC_002687.1 + 126727 0.69 0.954164
Target:  5'- -cUCGCGGGUaucgAUGCGGuCCCGGa-- -3'
miRNA:   3'- caAGCGUUCGga--UAUGCC-GGGCCaag -5'
10283 5' -54 NC_002687.1 + 301201 0.69 0.954164
Target:  5'- --cCGU-AGCCUGUcauacGCGGCCCGGc-- -3'
miRNA:   3'- caaGCGuUCGGAUA-----UGCCGGGCCaag -5'
10283 5' -54 NC_002687.1 + 250362 0.7 0.932326
Target:  5'- ---aGUAGGCCUGUcGCGGaCCCuGUUCa -3'
miRNA:   3'- caagCGUUCGGAUA-UGCC-GGGcCAAG- -5'
10283 5' -54 NC_002687.1 + 213388 0.7 0.932326
Target:  5'- ---aGCAAGCuCUAggGCGGCCUGGa-- -3'
miRNA:   3'- caagCGUUCG-GAUa-UGCCGGGCCaag -5'
10283 5' -54 NC_002687.1 + 105295 0.73 0.809047
Target:  5'- aGUUUGCAAGCCUGguggGCGGCaauggacgacgaCUGGUUg -3'
miRNA:   3'- -CAAGCGUUCGGAUa---UGCCG------------GGCCAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.