Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10284 | 3' | -52.3 | NC_002687.1 | + | 260904 | 0.66 | 0.998808 |
Target: 5'- uGAGccgcuGCCGCCGUcaa-GAGggUCcCCa -3' miRNA: 3'- gCUC-----UGGCGGCGuaugCUCuuAGuGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 112728 | 0.66 | 0.998787 |
Target: 5'- aGAGA-CGCCGUcgaggucuggaucAUccACGAGAGacuUCACCa -3' miRNA: 3'- gCUCUgGCGGCG-------------UA--UGCUCUU---AGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 307741 | 0.66 | 0.998576 |
Target: 5'- gGAGGCCaugGCCaUcgGCGAGGG-CGCCg -3' miRNA: 3'- gCUCUGG---CGGcGuaUGCUCUUaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 317186 | 0.66 | 0.998576 |
Target: 5'- uCGAGGCgguuguCGCCGUGUACGucucguGuAGUCAUCa -3' miRNA: 3'- -GCUCUG------GCGGCGUAUGCu-----C-UUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 11086 | 0.66 | 0.998576 |
Target: 5'- uGAGAgCGuCCGCuuccgacgccccGUACGGGAuguUCACg -3' miRNA: 3'- gCUCUgGC-GGCG------------UAUGCUCUu--AGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 254787 | 0.66 | 0.998576 |
Target: 5'- cCGGGcCUGUgGCGU-CGGGuAUCACCc -3' miRNA: 3'- -GCUCuGGCGgCGUAuGCUCuUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 70107 | 0.67 | 0.998307 |
Target: 5'- aGAGGCCacagagGCUGCAUcucuuuuuGCGgAGGucGUCGCCg -3' miRNA: 3'- gCUCUGG------CGGCGUA--------UGC-UCU--UAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 115246 | 0.67 | 0.998307 |
Target: 5'- cCGAGaAUCGCaGCGUAuCGAG-AUUGCCa -3' miRNA: 3'- -GCUC-UGGCGgCGUAU-GCUCuUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 260044 | 0.67 | 0.998307 |
Target: 5'- -uGGGCCGCgGUuUACGAGcacagGAUCugCg -3' miRNA: 3'- gcUCUGGCGgCGuAUGCUC-----UUAGugG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 281454 | 0.67 | 0.998307 |
Target: 5'- uCGAucucuuCCGCCGCAgcgGCGAaaguggaaGGAUCACa -3' miRNA: 3'- -GCUcu----GGCGGCGUa--UGCU--------CUUAGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 131822 | 0.67 | 0.998219 |
Target: 5'- aGAGAUCuCCGU--GCGAGAcguuagccuuuuccAUCGCCu -3' miRNA: 3'- gCUCUGGcGGCGuaUGCUCU--------------UAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 126448 | 0.67 | 0.997996 |
Target: 5'- ---uGCCGCCGgGU-CGAGGAgCGCCc -3' miRNA: 3'- gcucUGGCGGCgUAuGCUCUUaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 215643 | 0.67 | 0.997996 |
Target: 5'- cCGAGccuAUCGCCGUcgcCGAGccuAUCGCCg -3' miRNA: 3'- -GCUC---UGGCGGCGuauGCUCu--UAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 159203 | 0.67 | 0.997996 |
Target: 5'- uCGAcGGCCGCCGCcucCGGGcuuUCgACCg -3' miRNA: 3'- -GCU-CUGGCGGCGuauGCUCuu-AG-UGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 249228 | 0.67 | 0.997639 |
Target: 5'- aGAGACCGauuCCGCccGCGAauuuaGAAaucuUCGCCg -3' miRNA: 3'- gCUCUGGC---GGCGuaUGCU-----CUU----AGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 105338 | 0.67 | 0.997639 |
Target: 5'- aGAGA-CGCCuGCG-AUGAGGAUC-CCa -3' miRNA: 3'- gCUCUgGCGG-CGUaUGCUCUUAGuGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 294884 | 0.67 | 0.99723 |
Target: 5'- ---cACCGCCuGCGccGCGAGGcgCACCc -3' miRNA: 3'- gcucUGGCGG-CGUa-UGCUCUuaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 201066 | 0.67 | 0.99723 |
Target: 5'- gGGGAUCGCCGaggucgGAGAGggCACCu -3' miRNA: 3'- gCUCUGGCGGCguaug-CUCUUa-GUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 308788 | 0.67 | 0.99723 |
Target: 5'- gGGGGCgCGcCCGCcccGCcGGggUCGCCg -3' miRNA: 3'- gCUCUG-GC-GGCGua-UGcUCuuAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 313333 | 0.67 | 0.99723 |
Target: 5'- -aAGGCCGgUGCGgaagaguCGAGGAUCGCg -3' miRNA: 3'- gcUCUGGCgGCGUau-----GCUCUUAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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