miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 5' -54.4 NC_002687.1 + 238105 0.66 0.990341
Target:  5'- gCUGGCauuccUCUgauCUCGGCGUCGGUc- -3'
miRNA:   3'- -GACCGca---AGAau-GAGCUGCGGCCAca -5'
10284 5' -54.4 NC_002687.1 + 56871 0.66 0.990341
Target:  5'- cCUGcGCGUguaUGCcgCGGCGCCGGUu- -3'
miRNA:   3'- -GAC-CGCAagaAUGa-GCUGCGGCCAca -5'
10284 5' -54.4 NC_002687.1 + 8162 0.67 0.989088
Target:  5'- -cGGCGUcgUUguagugACUCGGgGCCuGGUGUa -3'
miRNA:   3'- gaCCGCA--AGaa----UGAGCUgCGG-CCACA- -5'
10284 5' -54.4 NC_002687.1 + 263605 0.67 0.987712
Target:  5'- --uGCGUcgaucgcaUCUUcucgaGCUUGGCGCUGGUGUa -3'
miRNA:   3'- gacCGCA--------AGAA-----UGAGCUGCGGCCACA- -5'
10284 5' -54.4 NC_002687.1 + 125068 0.67 0.986206
Target:  5'- uCUGGCGUUU---CUCGACGCCu---- -3'
miRNA:   3'- -GACCGCAAGaauGAGCUGCGGccaca -5'
10284 5' -54.4 NC_002687.1 + 210404 0.68 0.980832
Target:  5'- gUGGUcUUCUUGCUauuuuucgaCGACGCCGGc-- -3'
miRNA:   3'- gACCGcAAGAAUGA---------GCUGCGGCCaca -5'
10284 5' -54.4 NC_002687.1 + 117958 0.68 0.978732
Target:  5'- -cGGUGUUCaucacACcCGGCGCgGGUGUa -3'
miRNA:   3'- gaCCGCAAGaa---UGaGCUGCGgCCACA- -5'
10284 5' -54.4 NC_002687.1 + 239537 0.71 0.919084
Target:  5'- -gGGUGUUgaUGCg-GGCGCCGGUGa -3'
miRNA:   3'- gaCCGCAAgaAUGagCUGCGGCCACa -5'
10284 5' -54.4 NC_002687.1 + 302274 0.72 0.889286
Target:  5'- gCUGGCGU----GCUCGuauaGCCGGUGg -3'
miRNA:   3'- -GACCGCAagaaUGAGCug--CGGCCACa -5'
10284 5' -54.4 NC_002687.1 + 28614 0.72 0.882692
Target:  5'- aCUGGgGaacUCggcaggUGCUCGGCgGCCGGUGUc -3'
miRNA:   3'- -GACCgCa--AGa-----AUGAGCUG-CGGCCACA- -5'
10284 5' -54.4 NC_002687.1 + 295148 0.72 0.868897
Target:  5'- aUGGCGUcCUgcaGCacaCGGCGCCGGUGc -3'
miRNA:   3'- gACCGCAaGAa--UGa--GCUGCGGCCACa -5'
10284 5' -54.4 NC_002687.1 + 3169 1.07 0.01349
Target:  5'- uCUGGCGUUCUUACUCGACGCCGGUGUc -3'
miRNA:   3'- -GACCGCAAGAAUGAGCUGCGGCCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.