miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10285 5' -57.4 NC_002687.1 + 241452 0.66 0.967438
Target:  5'- -----cGGGUCGGUGgCGAagaagaugaaGUCGGAu -3'
miRNA:   3'- aguaauCCCGGCCACgGCUg---------CAGCCU- -5'
10285 5' -57.4 NC_002687.1 + 200541 0.66 0.964445
Target:  5'- ------aGGCUGGaGCCGACGUCGa- -3'
miRNA:   3'- aguaaucCCGGCCaCGGCUGCAGCcu -5'
10285 5' -57.4 NC_002687.1 + 204185 0.66 0.957894
Target:  5'- aUCAgcgcGGGGgCGGUGCCGAacagcaCGgUGGAu -3'
miRNA:   3'- -AGUaa--UCCCgGCCACGGCU------GCaGCCU- -5'
10285 5' -57.4 NC_002687.1 + 226795 0.67 0.954327
Target:  5'- -----cGGuGCCGGUGCCGGUGcCGGu -3'
miRNA:   3'- aguaauCC-CGGCCACGGCUGCaGCCu -5'
10285 5' -57.4 NC_002687.1 + 243590 0.67 0.954327
Target:  5'- uUCAg-AGGGCUGGaGCUGGgGUgGGAu -3'
miRNA:   3'- -AGUaaUCCCGGCCaCGGCUgCAgCCU- -5'
10285 5' -57.4 NC_002687.1 + 225908 0.67 0.933459
Target:  5'- ----gGGGGuuGGUGCCGAUaacaaCGGGg -3'
miRNA:   3'- aguaaUCCCggCCACGGCUGca---GCCU- -5'
10285 5' -57.4 NC_002687.1 + 281810 0.69 0.869415
Target:  5'- ----aGGGGCCGGggcgccagaagUGCCGAUGgcaGGAg -3'
miRNA:   3'- aguaaUCCCGGCC-----------ACGGCUGCag-CCU- -5'
10285 5' -57.4 NC_002687.1 + 164650 0.7 0.847858
Target:  5'- aCAUgccGGuGCCGGUGCCGAUGcCGc- -3'
miRNA:   3'- aGUAau-CC-CGGCCACGGCUGCaGCcu -5'
10285 5' -57.4 NC_002687.1 + 201053 0.71 0.774627
Target:  5'- cUCGagGGGGUgGGgggaucGCCGAgGUCGGAg -3'
miRNA:   3'- -AGUaaUCCCGgCCa-----CGGCUgCAGCCU- -5'
10285 5' -57.4 NC_002687.1 + 304531 0.72 0.76584
Target:  5'- ----cGGGGUCGGgGUCGGgGUCGGAg -3'
miRNA:   3'- aguaaUCCCGGCCaCGGCUgCAGCCU- -5'
10285 5' -57.4 NC_002687.1 + 20737 0.72 0.756948
Target:  5'- gUCGUggAGGaauugguggcuGCCGGUGCCGAUGUCa-- -3'
miRNA:   3'- -AGUAa-UCC-----------CGGCCACGGCUGCAGccu -5'
10285 5' -57.4 NC_002687.1 + 226280 0.72 0.756948
Target:  5'- ----gGGGGuuGGUGCCGAUGacaaCGGGg -3'
miRNA:   3'- aguaaUCCCggCCACGGCUGCa---GCCU- -5'
10285 5' -57.4 NC_002687.1 + 225722 0.72 0.756948
Target:  5'- ----gGGGGuuGGUGCCGAUGacaaCGGGg -3'
miRNA:   3'- aguaaUCCCggCCACGGCUGCa---GCCU- -5'
10285 5' -57.4 NC_002687.1 + 226094 0.72 0.756948
Target:  5'- ----gGGGGuuGGUGCCGAUGacaaCGGGg -3'
miRNA:   3'- aguaaUCCCggCCACGGCUGCa---GCCU- -5'
10285 5' -57.4 NC_002687.1 + 313339 0.73 0.70184
Target:  5'- aUCGUUAaGGCCGGUGCgGAagaGUCGaGGa -3'
miRNA:   3'- -AGUAAUcCCGGCCACGgCUg--CAGC-CU- -5'
10285 5' -57.4 NC_002687.1 + 237059 0.77 0.503854
Target:  5'- aUCuugUAGGGCUGGUcGCCGACGUCc-- -3'
miRNA:   3'- -AGua-AUCCCGGCCA-CGGCUGCAGccu -5'
10285 5' -57.4 NC_002687.1 + 3578 1.09 0.0054
Target:  5'- cUCAUUAGGGCCGGUGCCGACGUCGGAg -3'
miRNA:   3'- -AGUAAUCCCGGCCACGGCUGCAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.