Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10286 | 3' | -53.5 | NC_002687.1 | + | 129786 | 0.66 | 0.993762 |
Target: 5'- uGCGUCGUUccCGGGCGUgAUGUGCACa -3' miRNA: 3'- gUGCAGUAGcuGCUCGUG-UACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 76333 | 0.66 | 0.993762 |
Target: 5'- gCACGUCgguguccagcauGUCGACGucaaAGUACAUGCagaaCACg -3' miRNA: 3'- -GUGCAG------------UAGCUGC----UCGUGUACGc---GUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 85351 | 0.66 | 0.995291 |
Target: 5'- -cUGUUggCGAUGAGCGCGcacgGCGCGa -3' miRNA: 3'- guGCAGuaGCUGCUCGUGUa---CGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 330950 | 0.66 | 0.995291 |
Target: 5'- cCACGUaCGUgaaucgccaCGACGGcuGCcgGCAUGUGCACg -3' miRNA: 3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 41911 | 0.66 | 0.995933 |
Target: 5'- gACGUCAUUGGCccuuccaugGAugGCGUGCGCAa -3' miRNA: 3'- gUGCAGUAGCUG---------CUcgUGUACGCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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