miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10286 3' -53.5 NC_002687.1 + 74051 0.7 0.948216
Target:  5'- uGCGcCGUCGaccuaugucucuGCGAGCGCuugGCGUACu -3'
miRNA:   3'- gUGCaGUAGC------------UGCUCGUGua-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 68954 0.69 0.966224
Target:  5'- -cUGUCGUUGGCGaAGUAgGaGCGCACg -3'
miRNA:   3'- guGCAGUAGCUGC-UCGUgUaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 199616 0.69 0.969212
Target:  5'- -gUGUCAaccUCGACGGGCGCAcuuugaucgagcUGUGCGa -3'
miRNA:   3'- guGCAGU---AGCUGCUCGUGU------------ACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 332210 0.69 0.969212
Target:  5'- -cCGUCGUUGGaggcaUGAGCaACGUGCGCGg -3'
miRNA:   3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 200802 0.66 0.996501
Target:  5'- uGCGUCugcacCGAgGcGCACGaggGCGCGCa -3'
miRNA:   3'- gUGCAGua---GCUgCuCGUGUa--CGCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.