miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10287 3' -52.4 NC_002687.1 + 313122 0.66 0.996896
Target:  5'- --aGGuAUCCGC-GACGGCGGccauaucGACUCGc -3'
miRNA:   3'- uuaCC-UAGGCGaCUGUCGUU-------CUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 205433 0.66 0.995829
Target:  5'- cGUGGGaCaCGCUGugGGCAcGGACgUCAc -3'
miRNA:   3'- uUACCUaG-GCGACugUCGU-UCUG-AGU- -5'
10287 3' -52.4 NC_002687.1 + 90731 0.67 0.994399
Target:  5'- --cGGGUCgGUUGACgacgccauGGCAAGGCUg- -3'
miRNA:   3'- uuaCCUAGgCGACUG--------UCGUUCUGAgu -5'
10287 3' -52.4 NC_002687.1 + 114954 0.67 0.992598
Target:  5'- --aGGAUCacuggCGCUGACAGCGucGGuaGCUCu -3'
miRNA:   3'- uuaCCUAG-----GCGACUGUCGU--UC--UGAGu -5'
10287 3' -52.4 NC_002687.1 + 122516 0.67 0.990362
Target:  5'- cGUGGAUCCgGUUGAgGaUGAGGCUCAu -3'
miRNA:   3'- uUACCUAGG-CGACUgUcGUUCUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 242106 0.67 0.990362
Target:  5'- --cGGAUgCCGCcaGGCAGCAgaguaaaguGGACUCu -3'
miRNA:   3'- uuaCCUA-GGCGa-CUGUCGU---------UCUGAGu -5'
10287 3' -52.4 NC_002687.1 + 310047 0.68 0.989062
Target:  5'- gAGUGGGuguaUCCGCUG-UAGCAAGgACUa- -3'
miRNA:   3'- -UUACCU----AGGCGACuGUCGUUC-UGAgu -5'
10287 3' -52.4 NC_002687.1 + 282065 0.68 0.989062
Target:  5'- --aGGggCCGUagUGGCAGCAGcggcGGCUCGg -3'
miRNA:   3'- uuaCCuaGGCG--ACUGUCGUU----CUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 97438 0.68 0.986055
Target:  5'- cGUGGGuccUCCGgUGGCGGUAGGugUUc -3'
miRNA:   3'- uUACCU---AGGCgACUGUCGUUCugAGu -5'
10287 3' -52.4 NC_002687.1 + 279658 0.68 0.984332
Target:  5'- --aGGGUCCGCUGACucuucuGguGGGC-CGg -3'
miRNA:   3'- uuaCCUAGGCGACUGu-----CguUCUGaGU- -5'
10287 3' -52.4 NC_002687.1 + 74160 0.69 0.980406
Target:  5'- --cGGAcuggCCGUUGuACAGCAucauaucuGGACUCAg -3'
miRNA:   3'- uuaCCUa---GGCGAC-UGUCGU--------UCUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 61439 0.69 0.970426
Target:  5'- --gGGAUgcCCGgUGugGGCAAGACcUCAu -3'
miRNA:   3'- uuaCCUA--GGCgACugUCGUUCUG-AGU- -5'
10287 3' -52.4 NC_002687.1 + 85510 0.69 0.970426
Target:  5'- -cUGGAcCCGCUGgucccgccggcGCGGCAGGAC-CAc -3'
miRNA:   3'- uuACCUaGGCGAC-----------UGUCGUUCUGaGU- -5'
10287 3' -52.4 NC_002687.1 + 163976 0.7 0.967447
Target:  5'- uGUGGAUCCaCgGACAGCGAGuggaAUUCAg -3'
miRNA:   3'- uUACCUAGGcGaCUGUCGUUC----UGAGU- -5'
10287 3' -52.4 NC_002687.1 + 143432 0.7 0.960861
Target:  5'- --cGGAgaUCCGgUGACAGCcAAGGCaUCAc -3'
miRNA:   3'- uuaCCU--AGGCgACUGUCG-UUCUG-AGU- -5'
10287 3' -52.4 NC_002687.1 + 297481 0.7 0.960861
Target:  5'- --cGGAgaccuccaUCUGCguggaGGCGGCAAGGCUCGg -3'
miRNA:   3'- uuaCCU--------AGGCGa----CUGUCGUUCUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 86739 0.74 0.84499
Target:  5'- --cGGAcCCGCUGACGGCGAuGACg-- -3'
miRNA:   3'- uuaCCUaGGCGACUGUCGUU-CUGagu -5'
10287 3' -52.4 NC_002687.1 + 34161 0.95 0.080843
Target:  5'- gAAUGGAUUCGCUGACAGCGAGGCUUAu -3'
miRNA:   3'- -UUACCUAGGCGACUGUCGUUCUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 6746 1.05 0.019287
Target:  5'- aAAUGGAUCCGCUGACAGCAAGGCUCAu -3'
miRNA:   3'- -UUACCUAGGCGACUGUCGUUCUGAGU- -5'
10287 3' -52.4 NC_002687.1 + 5922 1.06 0.016363
Target:  5'- aAAUGGAUCCGCUGACAGCAAGACUCAu -3'
miRNA:   3'- -UUACCUAGGCGACUGUCGUUCUGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.