miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10287 5' -63 NC_002687.1 + 16454 0.66 0.827232
Target:  5'- --aGuGCGCUuaUGGUCGaUCgCCCCUGa -3'
miRNA:   3'- agaCuCGCGGcgACCAGC-AG-GGGGGC- -5'
10287 5' -63 NC_002687.1 + 72298 0.66 0.779136
Target:  5'- aUCUccGGCGgCGUacGUCGUUCCCCCGa -3'
miRNA:   3'- -AGAc-UCGCgGCGacCAGCAGGGGGGC- -5'
10287 5' -63 NC_002687.1 + 42253 0.67 0.768158
Target:  5'- --aGAGCGCUGCUGcGacuucaggaggaucUUGUUCCCUCGa -3'
miRNA:   3'- agaCUCGCGGCGAC-C--------------AGCAGGGGGGC- -5'
10287 5' -63 NC_002687.1 + 226040 0.67 0.744842
Target:  5'- cCUGAGUaGCCGuCUGuUCGUCCCggccgCCCa -3'
miRNA:   3'- aGACUCG-CGGC-GACcAGCAGGG-----GGGc -5'
10287 5' -63 NC_002687.1 + 173639 0.67 0.744842
Target:  5'- --cGAG-GCUGCUGG-CGUCCCUUCu -3'
miRNA:   3'- agaCUCgCGGCGACCaGCAGGGGGGc -5'
10287 5' -63 NC_002687.1 + 240056 0.67 0.736051
Target:  5'- gUCUGgcGGCGUCuggaccguGCUGGUCGUacaCCCgCCGc -3'
miRNA:   3'- -AGAC--UCGCGG--------CGACCAGCAg--GGG-GGC- -5'
10287 5' -63 NC_002687.1 + 15597 0.68 0.718254
Target:  5'- --aGAGCGCUcaUGGUCGaUCgCCCCUGa -3'
miRNA:   3'- agaCUCGCGGcgACCAGC-AG-GGGGGC- -5'
10287 5' -63 NC_002687.1 + 13881 0.68 0.718254
Target:  5'- --aGAGCGCUcaUGGUCGaUCgCCCCUGa -3'
miRNA:   3'- agaCUCGCGGcgACCAGC-AG-GGGGGC- -5'
10287 5' -63 NC_002687.1 + 14739 0.68 0.718254
Target:  5'- --aGAGCGCUcaUGGUCGaUCgCCCCUGa -3'
miRNA:   3'- agaCUCGCGGcgACCAGC-AG-GGGGGC- -5'
10287 5' -63 NC_002687.1 + 77627 0.68 0.700217
Target:  5'- cCUGuaauCGgCGCaaGUCGUCCCCCCa -3'
miRNA:   3'- aGACuc--GCgGCGacCAGCAGGGGGGc -5'
10287 5' -63 NC_002687.1 + 47165 0.69 0.635959
Target:  5'- gCUGGccggcacaucuGCGCCGCccgaGGcUGUCCCCCCu -3'
miRNA:   3'- aGACU-----------CGCGGCGa---CCaGCAGGGGGGc -5'
10287 5' -63 NC_002687.1 + 5883 1.07 0.002315
Target:  5'- gUCUGAGCGCCGCUGGUCGUCCCCCCGc -3'
miRNA:   3'- -AGACUCGCGGCGACCAGCAGGGGGGC- -5'
10287 5' -63 NC_002687.1 + 6707 1.07 0.002315
Target:  5'- gUCUGAGCGCCGCUGGUCGUCCCCCCGc -3'
miRNA:   3'- -AGACUCGCGGCGACCAGCAGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.