miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10288 5' -54.2 NC_002687.1 + 63493 0.66 0.99439
Target:  5'- uGUCCUCGaGgCCGaagUUAGCGGCccuGGCa -3'
miRNA:   3'- -CAGGAGCaUgGGCca-AAUCGUCG---CUG- -5'
10288 5' -54.2 NC_002687.1 + 32545 0.66 0.991619
Target:  5'- uUUCUCGUAUCUGGaagaaAGCgAGUGACa -3'
miRNA:   3'- cAGGAGCAUGGGCCaaa--UCG-UCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 156869 0.66 0.990487
Target:  5'- --aCUCGUGCCgGGUgguguccaUAGCAuggguccugcGCGACg -3'
miRNA:   3'- cagGAGCAUGGgCCAa-------AUCGU----------CGCUG- -5'
10288 5' -54.2 NC_002687.1 + 91615 0.67 0.987863
Target:  5'- cUCUUCGggaaacuuuuCCCGGUagAGC-GCGACg -3'
miRNA:   3'- cAGGAGCau--------GGGCCAaaUCGuCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 329781 0.67 0.982921
Target:  5'- -gCCgaggCGUGCCCGGU--GGC-GUGGCc -3'
miRNA:   3'- caGGa---GCAUGGGCCAaaUCGuCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 160331 0.68 0.978868
Target:  5'- uUCCUUGUccuuaCUGGccUUGGCGGCGGCu -3'
miRNA:   3'- cAGGAGCAug---GGCCa-AAUCGUCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 138655 0.68 0.974143
Target:  5'- aGUCCUUGcGCCCGGUcgaacUAGUGGauuaGGCg -3'
miRNA:   3'- -CAGGAGCaUGGGCCAa----AUCGUCg---CUG- -5'
10288 5' -54.2 NC_002687.1 + 159126 0.68 0.968694
Target:  5'- -aCCUCG-ACCCGGagugGGCGuGUGACc -3'
miRNA:   3'- caGGAGCaUGGGCCaaa-UCGU-CGCUG- -5'
10288 5' -54.2 NC_002687.1 + 170722 0.69 0.955442
Target:  5'- --gUUCGUGcCCCGGUUcgugggccgggUGGCAGCGGg -3'
miRNA:   3'- cagGAGCAU-GGGCCAA-----------AUCGUCGCUg -5'
10288 5' -54.2 NC_002687.1 + 280952 0.69 0.951611
Target:  5'- cGUCggCGgggGCCUGGguggcGGCAGCGGCg -3'
miRNA:   3'- -CAGgaGCa--UGGGCCaaa--UCGUCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 146388 0.71 0.913076
Target:  5'- uGUCCUUGUGuCCgaCGGagaAGCGGCGGCg -3'
miRNA:   3'- -CAGGAGCAU-GG--GCCaaaUCGUCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 111829 0.71 0.913076
Target:  5'- cGUCCUCGUuuucagagaCCGGUgucAGCacggGGCGACa -3'
miRNA:   3'- -CAGGAGCAug-------GGCCAaa-UCG----UCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 175827 0.72 0.881833
Target:  5'- aUCCUCGUGUCCGGggUGGCAuGgGAa -3'
miRNA:   3'- cAGGAGCAUGGGCCaaAUCGU-CgCUg -5'
10288 5' -54.2 NC_002687.1 + 264358 0.74 0.778213
Target:  5'- aGUCCUCcUACaCCGGggcucguaAGCGGCGACu -3'
miRNA:   3'- -CAGGAGcAUG-GGCCaaa-----UCGUCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 76614 0.78 0.59502
Target:  5'- -gCCUCGUGCUagaCGGU--GGCGGCGACg -3'
miRNA:   3'- caGGAGCAUGG---GCCAaaUCGUCGCUG- -5'
10288 5' -54.2 NC_002687.1 + 10346 1.1 0.007956
Target:  5'- uGUCCUCGUACCCGGUUUAGCAGCGACg -3'
miRNA:   3'- -CAGGAGCAUGGGCCAAAUCGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.