miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10289 5' -51.2 NC_002687.1 + 240659 0.66 0.999531
Target:  5'- --gGC-CCuUUCUCGUGaaaGCgGUGGAu -3'
miRNA:   3'- aaaUGaGGuAAGAGCACg--UGgCACCU- -5'
10289 5' -51.2 NC_002687.1 + 326935 0.66 0.999292
Target:  5'- --cGCcgCCGUUgUCGUGCA-CGUGGu -3'
miRNA:   3'- aaaUGa-GGUAAgAGCACGUgGCACCu -5'
10289 5' -51.2 NC_002687.1 + 207888 0.66 0.999292
Target:  5'- --gACaaCAUUCUCGUGC-CCGauggUGGAc -3'
miRNA:   3'- aaaUGagGUAAGAGCACGuGGC----ACCU- -5'
10289 5' -51.2 NC_002687.1 + 80499 0.66 0.99874
Target:  5'- -gUugUCCGaaucgUCUUGUGCGCUGaUGGu -3'
miRNA:   3'- aaAugAGGUa----AGAGCACGUGGC-ACCu -5'
10289 5' -51.2 NC_002687.1 + 207007 0.67 0.998196
Target:  5'- --gGgUCCuuUUCgggCGUGC-CCGUGGAg -3'
miRNA:   3'- aaaUgAGGu-AAGa--GCACGuGGCACCU- -5'
10289 5' -51.2 NC_002687.1 + 213704 0.67 0.997857
Target:  5'- -gUGCUCCuc-CUCGUuCACCGUGa- -3'
miRNA:   3'- aaAUGAGGuaaGAGCAcGUGGCACcu -5'
10289 5' -51.2 NC_002687.1 + 180712 0.68 0.995265
Target:  5'- --aACUCCAgca-CGUugaacGCGCCGUGGAc -3'
miRNA:   3'- aaaUGAGGUaagaGCA-----CGUGGCACCU- -5'
10289 5' -51.2 NC_002687.1 + 159323 0.7 0.980747
Target:  5'- --aACUCCGUUgUCGgGCG-CGUGGAa -3'
miRNA:   3'- aaaUGAGGUAAgAGCaCGUgGCACCU- -5'
10289 5' -51.2 NC_002687.1 + 259617 0.74 0.915393
Target:  5'- cUUGC-CCGaucCUCGUGgGCCGUGGAa -3'
miRNA:   3'- aAAUGaGGUaa-GAGCACgUGGCACCU- -5'
10289 5' -51.2 NC_002687.1 + 320493 0.74 0.903382
Target:  5'- --aACUCUAUUgUUGUGCACC-UGGAg -3'
miRNA:   3'- aaaUGAGGUAAgAGCACGUGGcACCU- -5'
10289 5' -51.2 NC_002687.1 + 245423 0.74 0.903382
Target:  5'- --aACUCUAUUgUUGUGCACC-UGGAg -3'
miRNA:   3'- aaaUGAGGUAAgAGCACGUGGcACCU- -5'
10289 5' -51.2 NC_002687.1 + 10939 1.07 0.020541
Target:  5'- uUUUACUCCAUUCUCGUGCACCGUGGAa -3'
miRNA:   3'- -AAAUGAGGUAAGAGCACGUGGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.