miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 5' -54.1 NC_002687.1 + 166274 0.66 0.989256
Target:  5'- cUUCUGCCGAGAggGuGAGC-ACGGCcGg -3'
miRNA:   3'- -AAGACGGCUCUa-C-CUCGcUGUUGuCa -5'
10290 5' -54.1 NC_002687.1 + 97245 0.66 0.987864
Target:  5'- cUUCUGCCgGAGccaauGUGGAaccCGACGGCGGa -3'
miRNA:   3'- -AAGACGG-CUC-----UACCUc--GCUGUUGUCa -5'
10290 5' -54.1 NC_002687.1 + 20186 0.66 0.987864
Target:  5'- cUCUGaUCGAGAccgUGGAGaCGGCAagagcGCAGa -3'
miRNA:   3'- aAGAC-GGCUCU---ACCUC-GCUGU-----UGUCa -5'
10290 5' -54.1 NC_002687.1 + 221612 0.66 0.987864
Target:  5'- cUCUGaUCGAGAccgUGGAGaCGGCAagagcGCAGa -3'
miRNA:   3'- aAGAC-GGCUCU---ACCUC-GCUGU-----UGUCa -5'
10290 5' -54.1 NC_002687.1 + 196020 0.66 0.987864
Target:  5'- cUCUGaUCGAGAccgUGGAGaCGGCAagagcGCAGa -3'
miRNA:   3'- aAGAC-GGCUCU---ACCUC-GCUGU-----UGUCa -5'
10290 5' -54.1 NC_002687.1 + 24069 0.67 0.984665
Target:  5'- --aUGCCG-GA-GGGGCGuCGGCGGUg -3'
miRNA:   3'- aagACGGCuCUaCCUCGCuGUUGUCA- -5'
10290 5' -54.1 NC_002687.1 + 96665 0.67 0.978716
Target:  5'- -cUUGuCCGAGAUGGAGC-ACucCGGUa -3'
miRNA:   3'- aaGAC-GGCUCUACCUCGcUGuuGUCA- -5'
10290 5' -54.1 NC_002687.1 + 307231 0.68 0.968329
Target:  5'- aUCggaGUgGAGGUGGGGagGACAACGGUu -3'
miRNA:   3'- aAGa--CGgCUCUACCUCg-CUGUUGUCA- -5'
10290 5' -54.1 NC_002687.1 + 23969 0.69 0.946698
Target:  5'- -gCUGUCGuggcggcguGGUGGuGUGGCAGCAGUg -3'
miRNA:   3'- aaGACGGCu--------CUACCuCGCUGUUGUCA- -5'
10290 5' -54.1 NC_002687.1 + 128236 0.7 0.917065
Target:  5'- -aUUGCUGGGAUGGAagacuuuCGGCAACAGa -3'
miRNA:   3'- aaGACGGCUCUACCUc------GCUGUUGUCa -5'
10290 5' -54.1 NC_002687.1 + 89480 0.74 0.753712
Target:  5'- -gCUGCCGAGGaGGAGCGAgGuauuacuGCAGUc -3'
miRNA:   3'- aaGACGGCUCUaCCUCGCUgU-------UGUCA- -5'
10290 5' -54.1 NC_002687.1 + 12516 1.05 0.013599
Target:  5'- cUUCUGCCGAGAUGGAGCGACAACAGUg -3'
miRNA:   3'- -AAGACGGCUCUACCUCGCUGUUGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.