miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10291 3' -43.8 NC_002687.1 + 87747 0.66 1
Target:  5'- gCCUcuGGUAGACGGgcUGCUCaagCGGUCUGGg -3'
miRNA:   3'- -GGAu-UUAUUUGUU--GUGAG---GCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 84224 0.66 1
Target:  5'- aCCUc---GAGCAACGCUCUGG-CcGAg -3'
miRNA:   3'- -GGAuuuaUUUGUUGUGAGGCCaGaCU- -5'
10291 3' -43.8 NC_002687.1 + 100980 0.68 1
Target:  5'- aCCUAAAaaauacagAAGCAGCACUCUaccuaGGUCa-- -3'
miRNA:   3'- -GGAUUUa-------UUUGUUGUGAGG-----CCAGacu -5'
10291 3' -43.8 NC_002687.1 + 75371 0.68 1
Target:  5'- aUUGGGUGAACu-CGCUCUGuUCUGAg -3'
miRNA:   3'- gGAUUUAUUUGuuGUGAGGCcAGACU- -5'
10291 3' -43.8 NC_002687.1 + 39270 0.69 1
Target:  5'- aCCUGcGUGucguCAACACUCUGGUUc-- -3'
miRNA:   3'- -GGAUuUAUuu--GUUGUGAGGCCAGacu -5'
10291 3' -43.8 NC_002687.1 + 26021 0.69 1
Target:  5'- uCCUAcuuuuUAGACGACGCaaCGGUCUa- -3'
miRNA:   3'- -GGAUuu---AUUUGUUGUGagGCCAGAcu -5'
10291 3' -43.8 NC_002687.1 + 111770 0.69 1
Target:  5'- gCUGuGUAucCAGCAUuguaUCCGGUCUGc -3'
miRNA:   3'- gGAUuUAUuuGUUGUG----AGGCCAGACu -5'
10291 3' -43.8 NC_002687.1 + 48145 0.68 1
Target:  5'- aCUGGggGGACAGC-CUCCGGUg--- -3'
miRNA:   3'- gGAUUuaUUUGUUGuGAGGCCAgacu -5'
10291 3' -43.8 NC_002687.1 + 283022 0.68 1
Target:  5'- --gAAAaAAAgAGCACUCCGGUCc-- -3'
miRNA:   3'- ggaUUUaUUUgUUGUGAGGCCAGacu -5'
10291 3' -43.8 NC_002687.1 + 147477 0.67 1
Target:  5'- uCUUGGAUugaacGCGAUGC-CUGGUCUGAc -3'
miRNA:   3'- -GGAUUUAuu---UGUUGUGaGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 281354 0.66 1
Target:  5'- uCCggu----ACAACACUCaGGUUUGAu -3'
miRNA:   3'- -GGauuuauuUGUUGUGAGgCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 146205 0.66 1
Target:  5'- gCUcAAGUGGccCAACACUCCGGcCgGAu -3'
miRNA:   3'- gGA-UUUAUUu-GUUGUGAGGCCaGaCU- -5'
10291 3' -43.8 NC_002687.1 + 100792 0.71 0.999998
Target:  5'- gCCUGGcAUcgGCGACAUUUCGGUCa-- -3'
miRNA:   3'- -GGAUU-UAuuUGUUGUGAGGCCAGacu -5'
10291 3' -43.8 NC_002687.1 + 144173 0.72 0.999993
Target:  5'- aCCUGGGUAcauacaaccggGACGACAgUCCGGg-UGAg -3'
miRNA:   3'- -GGAUUUAU-----------UUGUUGUgAGGCCagACU- -5'
10291 3' -43.8 NC_002687.1 + 45206 0.72 0.999981
Target:  5'- aCUGAGgcaAGGCAACACUCCucuccaGGUgUGAg -3'
miRNA:   3'- gGAUUUa--UUUGUUGUGAGG------CCAgACU- -5'
10291 3' -43.8 NC_002687.1 + 102697 0.73 0.999918
Target:  5'- gUCUGAugcauGUGAGCAACAUuauuuuauaUUCGGUCUGGa -3'
miRNA:   3'- -GGAUU-----UAUUUGUUGUG---------AGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 103897 0.74 0.999772
Target:  5'- aCUGGAUGAgguucaucGCGAUgaACUCCGGUgUGAa -3'
miRNA:   3'- gGAUUUAUU--------UGUUG--UGAGGCCAgACU- -5'
10291 3' -43.8 NC_002687.1 + 16180 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 15653 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 14463 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.