Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10291 | 3' | -43.8 | NC_002687.1 | + | 16512 | 1.15 | 0.052774 |
Target: 5'- aCCUAAAUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGAUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 16582 | 1.15 | 0.052774 |
Target: 5'- aCCUAAAUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGAUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 16777 | 1.15 | 0.052774 |
Target: 5'- aCCUAAAUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGAUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 16847 | 1.15 | 0.052774 |
Target: 5'- aCCUAAAUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGAUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 16917 | 1.04 | 0.178608 |
Target: 5'- aCCcAAGUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGaUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 17108 | 1.04 | 0.178608 |
Target: 5'- aCCcAAGUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGaUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 17178 | 1.15 | 0.052774 |
Target: 5'- aCCUAAAUAAACAACACUCCGGUCUGAa -3' miRNA: 3'- -GGAUUUAUUUGUUGUGAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 17247 | 0.88 | 0.768032 |
Target: 5'- aCCcAAGUAAACAACA-UCCGGUCUGAa -3' miRNA: 3'- -GGaUUUAUUUGUUGUgAGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 26021 | 0.69 | 1 |
Target: 5'- uCCUAcuuuuUAGACGACGCaaCGGUCUa- -3' miRNA: 3'- -GGAUuu---AUUUGUUGUGagGCCAGAcu -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 39270 | 0.69 | 1 |
Target: 5'- aCCUGcGUGucguCAACACUCUGGUUc-- -3' miRNA: 3'- -GGAUuUAUuu--GUUGUGAGGCCAGacu -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 45206 | 0.72 | 0.999981 |
Target: 5'- aCUGAGgcaAGGCAACACUCCucuccaGGUgUGAg -3' miRNA: 3'- gGAUUUa--UUUGUUGUGAGG------CCAgACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 48145 | 0.68 | 1 |
Target: 5'- aCUGGggGGACAGC-CUCCGGUg--- -3' miRNA: 3'- gGAUUuaUUUGUUGuGAGGCCAgacu -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 75371 | 0.68 | 1 |
Target: 5'- aUUGGGUGAACu-CGCUCUGuUCUGAg -3' miRNA: 3'- gGAUUUAUUUGuuGUGAGGCcAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 84224 | 0.66 | 1 |
Target: 5'- aCCUc---GAGCAACGCUCUGG-CcGAg -3' miRNA: 3'- -GGAuuuaUUUGUUGUGAGGCCaGaCU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 87747 | 0.66 | 1 |
Target: 5'- gCCUcuGGUAGACGGgcUGCUCaagCGGUCUGGg -3' miRNA: 3'- -GGAu-UUAUUUGUU--GUGAG---GCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 100792 | 0.71 | 0.999998 |
Target: 5'- gCCUGGcAUcgGCGACAUUUCGGUCa-- -3' miRNA: 3'- -GGAUU-UAuuUGUUGUGAGGCCAGacu -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 100980 | 0.68 | 1 |
Target: 5'- aCCUAAAaaauacagAAGCAGCACUCUaccuaGGUCa-- -3' miRNA: 3'- -GGAUUUa-------UUUGUUGUGAGG-----CCAGacu -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 102697 | 0.73 | 0.999918 |
Target: 5'- gUCUGAugcauGUGAGCAACAUuauuuuauaUUCGGUCUGGa -3' miRNA: 3'- -GGAUU-----UAUUUGUUGUG---------AGGCCAGACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 103897 | 0.74 | 0.999772 |
Target: 5'- aCUGGAUGAgguucaucGCGAUgaACUCCGGUgUGAa -3' miRNA: 3'- gGAUUUAUU--------UGUUG--UGAGGCCAgACU- -5' |
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10291 | 3' | -43.8 | NC_002687.1 | + | 111770 | 0.69 | 1 |
Target: 5'- gCUGuGUAucCAGCAUuguaUCCGGUCUGc -3' miRNA: 3'- gGAUuUAUuuGUUGUG----AGGCCAGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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