miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10291 3' -43.8 NC_002687.1 + 14605 1.04 0.178608
Target:  5'- aCCcAAGUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- -GGaUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 16180 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 17247 0.88 0.768032
Target:  5'- aCCcAAGUAAACAACA-UCCGGUCUGAa -3'
miRNA:   3'- -GGaUUUAUUUGUUGUgAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 16251 0.98 0.339222
Target:  5'- aCCUAAAUAAACAACACU-CGGUCUGAa -3'
miRNA:   3'- -GGAUUUAUUUGUUGUGAgGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 14010 1.04 0.192982
Target:  5'- -aUAAAUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- ggAUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 14271 1.04 0.192982
Target:  5'- -aUAAAUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- ggAUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 15130 1.04 0.192982
Target:  5'- -aUAAAUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- ggAUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 15988 1.04 0.192982
Target:  5'- -aUAAAUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- ggAUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 14204 1.04 0.178608
Target:  5'- aCCcAAGUAAACAACACUCCGGUCUGAa -3'
miRNA:   3'- -GGaUUUAUUUGUUGUGAGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 15653 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 15321 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 14463 0.77 0.997799
Target:  5'- -aUAAAcAAACGACAUUCCGGaCUGAa -3'
miRNA:   3'- ggAUUUaUUUGUUGUGAGGCCaGACU- -5'
10291 3' -43.8 NC_002687.1 + 281354 0.66 1
Target:  5'- uCCggu----ACAACACUCaGGUUUGAu -3'
miRNA:   3'- -GGauuuauuUGUUGUGAGgCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 147477 0.67 1
Target:  5'- uCUUGGAUugaacGCGAUGC-CUGGUCUGAc -3'
miRNA:   3'- -GGAUUUAuu---UGUUGUGaGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 283022 0.68 1
Target:  5'- --gAAAaAAAgAGCACUCCGGUCc-- -3'
miRNA:   3'- ggaUUUaUUUgUUGUGAGGCCAGacu -5'
10291 3' -43.8 NC_002687.1 + 48145 0.68 1
Target:  5'- aCUGGggGGACAGC-CUCCGGUg--- -3'
miRNA:   3'- gGAUUuaUUUGUUGuGAGGCCAgacu -5'
10291 3' -43.8 NC_002687.1 + 111770 0.69 1
Target:  5'- gCUGuGUAucCAGCAUuguaUCCGGUCUGc -3'
miRNA:   3'- gGAUuUAUuuGUUGUG----AGGCCAGACu -5'
10291 3' -43.8 NC_002687.1 + 45206 0.72 0.999981
Target:  5'- aCUGAGgcaAGGCAACACUCCucuccaGGUgUGAg -3'
miRNA:   3'- gGAUUUa--UUUGUUGUGAGG------CCAgACU- -5'
10291 3' -43.8 NC_002687.1 + 102697 0.73 0.999918
Target:  5'- gUCUGAugcauGUGAGCAACAUuauuuuauaUUCGGUCUGGa -3'
miRNA:   3'- -GGAUU-----UAUUUGUUGUG---------AGGCCAGACU- -5'
10291 3' -43.8 NC_002687.1 + 103897 0.74 0.999772
Target:  5'- aCUGGAUGAgguucaucGCGAUgaACUCCGGUgUGAa -3'
miRNA:   3'- gGAUUUAUU--------UGUUG--UGAGGCCAgACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.