miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10291 5' -55.6 NC_002687.1 + 5679 0.66 0.980884
Target:  5'- -cUCGACCaGUcGAGCgagGCGCUGacauauuUCUGCGu -3'
miRNA:   3'- cuAGCUGG-CA-CUCG---CGUGAC-------AGACGC- -5'
10291 5' -55.6 NC_002687.1 + 14165 0.93 0.077447
Target:  5'- cGAUCGACCaUGAGCGCACUGUcCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGACA-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 14426 0.82 0.305942
Target:  5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 14496 0.78 0.498385
Target:  5'- cGAUCGACCaUGAGCGCACUauuucuucUCUGCa -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAc-------AGACGc -5'
10291 5' -55.6 NC_002687.1 + 14566 0.72 0.800359
Target:  5'- cGAUCGACCaUGAGgGCACUGUUUc-- -3'
miRNA:   3'- -CUAGCUGGcACUCgCGUGACAGAcgc -5'
10291 5' -55.6 NC_002687.1 + 14757 1.1 0.006478
Target:  5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3'
miRNA:   3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5'
10291 5' -55.6 NC_002687.1 + 14827 0.69 0.930475
Target:  5'- cGAUCGACCaUGAGCGCACUa------ -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAcagacgc -5'
10291 5' -55.6 NC_002687.1 + 15023 0.93 0.077447
Target:  5'- cGAUCGACCaUGAGCGCACUGUcCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGACA-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 15284 0.82 0.305942
Target:  5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 15354 0.78 0.498385
Target:  5'- cGAUCGACCaUGAGCGCACUauuucuucUCUGCa -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAc-------AGACGc -5'
10291 5' -55.6 NC_002687.1 + 15424 0.72 0.800359
Target:  5'- cGAUCGACCaUGAGgGCACUGUUUc-- -3'
miRNA:   3'- -CUAGCUGGcACUCgCGUGACAGAcgc -5'
10291 5' -55.6 NC_002687.1 + 15616 0.82 0.305942
Target:  5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 15686 0.78 0.498385
Target:  5'- cGAUCGACCaUGAGCGCACUauuucuucUCUGCa -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAc-------AGACGc -5'
10291 5' -55.6 NC_002687.1 + 15881 1.1 0.006478
Target:  5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3'
miRNA:   3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5'
10291 5' -55.6 NC_002687.1 + 16143 0.82 0.305942
Target:  5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5'
10291 5' -55.6 NC_002687.1 + 16213 0.78 0.498385
Target:  5'- cGAUCGACCaUGAGCGCACUauuucuucUCUGCa -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAc-------AGACGc -5'
10291 5' -55.6 NC_002687.1 + 16282 0.72 0.800359
Target:  5'- cGAUCGACCaUGAGgGCACUGUUUc-- -3'
miRNA:   3'- -CUAGCUGGcACUCgCGUGACAGAcgc -5'
10291 5' -55.6 NC_002687.1 + 16473 1.1 0.006478
Target:  5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3'
miRNA:   3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5'
10291 5' -55.6 NC_002687.1 + 16543 0.69 0.930475
Target:  5'- cGAUCGACCaUGAGCGCACUa------ -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGAcagacgc -5'
10291 5' -55.6 NC_002687.1 + 16738 1 0.029013
Target:  5'- cGAUCGACCaUGAGCGCACUGUCUGCGg -3'
miRNA:   3'- -CUAGCUGGcACUCGCGUGACAGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.