Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10291 | 5' | -55.6 | NC_002687.1 | + | 15284 | 0.82 | 0.305942 |
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Target: 5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 15616 | 0.82 | 0.305942 |
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Target: 5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 16143 | 0.82 | 0.305942 |
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Target: 5'- cGAUCGACCaUGAGCGCACUcucCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGAca-GACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 14165 | 0.93 | 0.077447 |
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Target: 5'- cGAUCGACCaUGAGCGCACUGUcCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGACA-GACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 15023 | 0.93 | 0.077447 |
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Target: 5'- cGAUCGACCaUGAGCGCACUGUcCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGACA-GACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 16738 | 1 | 0.029013 |
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Target: 5'- cGAUCGACCaUGAGCGCACUGUCUGCGg -3' miRNA: 3'- -CUAGCUGGcACUCGCGUGACAGACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 17069 | 1.09 | 0.006829 |
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Target: 5'- cGAUCGACCGUGAGCGCACUGUCUGCGa -3' miRNA: 3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 14757 | 1.1 | 0.006478 |
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Target: 5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3' miRNA: 3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 16473 | 1.1 | 0.006478 |
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Target: 5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3' miRNA: 3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5' |
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| 10291 | 5' | -55.6 | NC_002687.1 | + | 15881 | 1.1 | 0.006478 |
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Target: 5'- cGAUCGACCGUGAGCGCACUGUCUGCGg -3' miRNA: 3'- -CUAGCUGGCACUCGCGUGACAGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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