miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10292 3' -51.7 NC_002687.1 + 17777 1.02 0.040069
Target:  5'- gGCUGCAACGCUUGGCAUUGACAUUCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 17888 0.74 0.88769
Target:  5'- gGCCGCAACGCUUGG-AgUGuACAUcCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCgUgAC-UGUAaGU- -5'
10292 3' -51.7 NC_002687.1 + 17999 0.82 0.498703
Target:  5'- gGCCGCAACGCUUGGaGCgGACAUcCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCgUGaCUGUAaGU- -5'
10292 3' -51.7 NC_002687.1 + 18110 0.89 0.216043
Target:  5'- gGCUGCAACGCUUaGCAUUGACAUUCAc -3'
miRNA:   3'- -CGGCGUUGCGAAcCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 18221 1.11 0.011506
Target:  5'- gGCCGCAACGCUUGGCACUGACAUUCAu -3'
miRNA:   3'- -CGGCGUUGCGAACCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 25569 0.68 0.995519
Target:  5'- uGCCGCAgaaccaGCgGCUUGGCACaaccgaGACAcgCGa -3'
miRNA:   3'- -CGGCGU------UG-CGAACCGUGa-----CUGUaaGU- -5'
10292 3' -51.7 NC_002687.1 + 26403 0.73 0.906903
Target:  5'- --gGCu-CGCUUGGCACUGGCAUa-- -3'
miRNA:   3'- cggCGuuGCGAACCGUGACUGUAagu -5'
10292 3' -51.7 NC_002687.1 + 44252 0.69 0.98699
Target:  5'- cUCGCAGCGUUuuuuaUGGaCGCUGGC-UUCAu -3'
miRNA:   3'- cGGCGUUGCGA-----ACC-GUGACUGuAAGU- -5'
10292 3' -51.7 NC_002687.1 + 59488 0.67 0.997977
Target:  5'- aCCGCGACuCUUGGCGa-GACAUg-- -3'
miRNA:   3'- cGGCGUUGcGAACCGUgaCUGUAagu -5'
10292 3' -51.7 NC_002687.1 + 87708 0.68 0.992139
Target:  5'- cGCCG-GGCGUgUGGCGCUGACc---- -3'
miRNA:   3'- -CGGCgUUGCGaACCGUGACUGuaagu -5'
10292 3' -51.7 NC_002687.1 + 103401 0.66 0.999015
Target:  5'- gGCUGCAGC-CUUGGCGgccUUGGCug-CAg -3'
miRNA:   3'- -CGGCGUUGcGAACCGU---GACUGuaaGU- -5'
10292 3' -51.7 NC_002687.1 + 134064 0.68 0.992139
Target:  5'- aCCGC-GCGCUcuUGGCACcgUGGCG-UCAc -3'
miRNA:   3'- cGGCGuUGCGA--ACCGUG--ACUGUaAGU- -5'
10292 3' -51.7 NC_002687.1 + 135619 0.69 0.989817
Target:  5'- aCCGCGACGCggugcagcgguUUGGCAacggggacauCUGGCAggCAu -3'
miRNA:   3'- cGGCGUUGCG-----------AACCGU----------GACUGUaaGU- -5'
10292 3' -51.7 NC_002687.1 + 145831 0.66 0.998812
Target:  5'- cGCCGaGGCGCgcgccggGGCGCUGGg--UCAg -3'
miRNA:   3'- -CGGCgUUGCGaa-----CCGUGACUguaAGU- -5'
10292 3' -51.7 NC_002687.1 + 155149 0.66 0.998812
Target:  5'- cGCCGaCGACGCggugucuacGGCGgUGugcACAUUCGg -3'
miRNA:   3'- -CGGC-GUUGCGaa-------CCGUgAC---UGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 201849 0.67 0.997977
Target:  5'- uCCaGCGGCgGCUUGGCACaGugGcUCAc -3'
miRNA:   3'- cGG-CGUUG-CGAACCGUGaCugUaAGU- -5'
10292 3' -51.7 NC_002687.1 + 205047 0.69 0.989817
Target:  5'- aGUCGCGACGUUgcGGCACauggUGACGUcCGu -3'
miRNA:   3'- -CGGCGUUGCGAa-CCGUG----ACUGUAaGU- -5'
10292 3' -51.7 NC_002687.1 + 224120 0.73 0.929317
Target:  5'- gGCgGUGGCGC-UGGCGCUGGCGguggCGg -3'
miRNA:   3'- -CGgCGUUGCGaACCGUGACUGUaa--GU- -5'
10292 3' -51.7 NC_002687.1 + 224149 0.68 0.992139
Target:  5'- uGgCGCuGGCGC-UGGCGCUGGCGguggCGg -3'
miRNA:   3'- -CgGCG-UUGCGaACCGUGACUGUaa--GU- -5'
10292 3' -51.7 NC_002687.1 + 224853 0.71 0.963117
Target:  5'- aGCCGcCGACGCggcGGCGCcGGCAcggUCGg -3'
miRNA:   3'- -CGGC-GUUGCGaa-CCGUGaCUGUa--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.