Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10293 | 3' | -50.2 | NC_002687.1 | + | 305249 | 0.67 | 0.999487 |
Target: 5'- aGGAGU--UGCCGAGCAGauGAUCc- -3' miRNA: 3'- gCCUCGuuGCGGUUCGUCauUUAGca -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 204193 | 0.67 | 0.999585 |
Target: 5'- gGGGGCggUGCCGaacAGCAcgGUGGAuuUCGa -3' miRNA: 3'- gCCUCGuuGCGGU---UCGU--CAUUU--AGCa -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 60621 | 0.66 | 0.999789 |
Target: 5'- aCGGcaaAGCGA-GCCAAGCAGaacgAAGUgGUg -3' miRNA: 3'- -GCC---UCGUUgCGGUUCGUCa---UUUAgCA- -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 303870 | 0.66 | 0.999833 |
Target: 5'- cCGGAGCAACcguaGCUGcagcAGCAGUAGcgCu- -3' miRNA: 3'- -GCCUCGUUG----CGGU----UCGUCAUUuaGca -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 13301 | 0.68 | 0.998634 |
Target: 5'- -aGAGCGACGC--AGCAGgu-AUCGUa -3' miRNA: 3'- gcCUCGUUGCGguUCGUCauuUAGCA- -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 231527 | 0.68 | 0.998364 |
Target: 5'- gGGAuUAGCGCCAcuuuGGCAGUaucGAGUUGUu -3' miRNA: 3'- gCCUcGUUGCGGU----UCGUCA---UUUAGCA- -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 121297 | 0.68 | 0.998364 |
Target: 5'- aGGAagacGCAuuGCGCCAAGgAGUucauAGUCGa -3' miRNA: 3'- gCCU----CGU--UGCGGUUCgUCAu---UUAGCa -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 168657 | 0.68 | 0.998051 |
Target: 5'- aCGGGGCGACGauaCAaacacAGCAGUuuGUCc- -3' miRNA: 3'- -GCCUCGUUGCg--GU-----UCGUCAuuUAGca -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 281957 | 0.68 | 0.997689 |
Target: 5'- aGGGGCggUGCCGGG-GGgcAAUCGc -3' miRNA: 3'- gCCUCGuuGCGGUUCgUCauUUAGCa -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 279100 | 0.68 | 0.997689 |
Target: 5'- gCGGGGguGUGCCAAGauGUGAAUCGg -3' miRNA: 3'- -GCCUCguUGCGGUUCguCAUUUAGCa -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 126137 | 0.68 | 0.997689 |
Target: 5'- aGGAGCcACGCCAAGCuucuuGUucacUUGUg -3' miRNA: 3'- gCCUCGuUGCGGUUCGu----CAuuu-AGCA- -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 11359 | 0.69 | 0.996795 |
Target: 5'- uCGGAGCAGCagcagcagaaGCCGcgguAGCAGUAGccgCGg -3' miRNA: 3'- -GCCUCGUUG----------CGGU----UCGUCAUUua-GCa -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 259819 | 0.69 | 0.994934 |
Target: 5'- gCGG-GCAGCGCCGAcaagauGCuGUGGGUCa- -3' miRNA: 3'- -GCCuCGUUGCGGUU------CGuCAUUUAGca -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 300832 | 0.73 | 0.952069 |
Target: 5'- uGGAGCAACGCCGGGCcg-----CGUa -3' miRNA: 3'- gCCUCGUUGCGGUUCGucauuuaGCA- -5' |
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10293 | 3' | -50.2 | NC_002687.1 | + | 22169 | 0.66 | 0.999869 |
Target: 5'- gGGAGCAu--UCAGGCAGUGuccGUCGc -3' miRNA: 3'- gCCUCGUugcGGUUCGUCAUu--UAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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