miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 3' -50.2 NC_002687.1 + 18732 1.09 0.020038
Target:  5'- aCGGAGCAACGCCAAGCAGUAAAUCGUa -3'
miRNA:   3'- -GCCUCGUUGCGGUUCGUCAUUUAGCA- -5'
10293 3' -50.2 NC_002687.1 + 300832 0.73 0.952069
Target:  5'- uGGAGCAACGCCGGGCcg-----CGUa -3'
miRNA:   3'- gCCUCGUUGCGGUUCGucauuuaGCA- -5'
10293 3' -50.2 NC_002687.1 + 87717 0.71 0.988625
Target:  5'- uGGGGuCAACGCCGGGCGuGUGGcgCu- -3'
miRNA:   3'- gCCUC-GUUGCGGUUCGU-CAUUuaGca -5'
10293 3' -50.2 NC_002687.1 + 80811 0.7 0.993631
Target:  5'- cCGGAGCAACGCCucugucAaagaacgcacgcacgAGCAGUAGGUa-- -3'
miRNA:   3'- -GCCUCGUUGCGG------U---------------UCGUCAUUUAgca -5'
10293 3' -50.2 NC_002687.1 + 259819 0.69 0.994934
Target:  5'- gCGG-GCAGCGCCGAcaagauGCuGUGGGUCa- -3'
miRNA:   3'- -GCCuCGUUGCGGUU------CGuCAUUUAGca -5'
10293 3' -50.2 NC_002687.1 + 11359 0.69 0.996795
Target:  5'- uCGGAGCAGCagcagcagaaGCCGcgguAGCAGUAGccgCGg -3'
miRNA:   3'- -GCCUCGUUG----------CGGU----UCGUCAUUua-GCa -5'
10293 3' -50.2 NC_002687.1 + 279100 0.68 0.997689
Target:  5'- gCGGGGguGUGCCAAGauGUGAAUCGg -3'
miRNA:   3'- -GCCUCguUGCGGUUCguCAUUUAGCa -5'
10293 3' -50.2 NC_002687.1 + 126137 0.68 0.997689
Target:  5'- aGGAGCcACGCCAAGCuucuuGUucacUUGUg -3'
miRNA:   3'- gCCUCGuUGCGGUUCGu----CAuuu-AGCA- -5'
10293 3' -50.2 NC_002687.1 + 281957 0.68 0.997689
Target:  5'- aGGGGCggUGCCGGG-GGgcAAUCGc -3'
miRNA:   3'- gCCUCGuuGCGGUUCgUCauUUAGCa -5'
10293 3' -50.2 NC_002687.1 + 168657 0.68 0.998051
Target:  5'- aCGGGGCGACGauaCAaacacAGCAGUuuGUCc- -3'
miRNA:   3'- -GCCUCGUUGCg--GU-----UCGUCAuuUAGca -5'
10293 3' -50.2 NC_002687.1 + 231527 0.68 0.998364
Target:  5'- gGGAuUAGCGCCAcuuuGGCAGUaucGAGUUGUu -3'
miRNA:   3'- gCCUcGUUGCGGU----UCGUCA---UUUAGCA- -5'
10293 3' -50.2 NC_002687.1 + 24066 0.68 0.998364
Target:  5'- cCGGAGgGGCGUCG-GCGGUGAGggGg -3'
miRNA:   3'- -GCCUCgUUGCGGUuCGUCAUUUagCa -5'
10293 3' -50.2 NC_002687.1 + 121297 0.68 0.998364
Target:  5'- aGGAagacGCAuuGCGCCAAGgAGUucauAGUCGa -3'
miRNA:   3'- gCCU----CGU--UGCGGUUCgUCAu---UUAGCa -5'
10293 3' -50.2 NC_002687.1 + 13301 0.68 0.998634
Target:  5'- -aGAGCGACGC--AGCAGgu-AUCGUa -3'
miRNA:   3'- gcCUCGUUGCGguUCGUCauuUAGCA- -5'
10293 3' -50.2 NC_002687.1 + 87046 0.68 0.998865
Target:  5'- uCGGAGgGAuuccUGCCGAGaucuGUAGAUCGg -3'
miRNA:   3'- -GCCUCgUU----GCGGUUCgu--CAUUUAGCa -5'
10293 3' -50.2 NC_002687.1 + 47640 0.68 0.998865
Target:  5'- gGGAGCGuuUGCUcAGCAGUAGGUUu- -3'
miRNA:   3'- gCCUCGUu-GCGGuUCGUCAUUUAGca -5'
10293 3' -50.2 NC_002687.1 + 210681 0.67 0.999061
Target:  5'- gCGG-GCgAGCGCCAGaacGCAG-AGGUCGg -3'
miRNA:   3'- -GCCuCG-UUGCGGUU---CGUCaUUUAGCa -5'
10293 3' -50.2 NC_002687.1 + 255041 0.67 0.999228
Target:  5'- uGG-GCAACGCCGAGgcccucCAGUAcAUUGa -3'
miRNA:   3'- gCCuCGUUGCGGUUC------GUCAUuUAGCa -5'
10293 3' -50.2 NC_002687.1 + 316377 0.67 0.999369
Target:  5'- aCGGAGCAacACGCgAAGC-GUGAAg--- -3'
miRNA:   3'- -GCCUCGU--UGCGgUUCGuCAUUUagca -5'
10293 3' -50.2 NC_002687.1 + 161474 0.67 0.999369
Target:  5'- uGGAuCAugGCCAcGCGGccgGGAUCGa -3'
miRNA:   3'- gCCUcGUugCGGUuCGUCa--UUUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.