miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 5' -54.8 NC_002687.1 + 87710 0.67 0.986131
Target:  5'- -aACGCCGggCGU-GUGGcGCUgaCCUGCc -3'
miRNA:   3'- caUGCGGCa-GCAuCGCCaUGA--GGACG- -5'
10295 5' -54.8 NC_002687.1 + 333579 0.67 0.984487
Target:  5'- -aACGCCG-CGUGGuCGGaUGCa-CUGCa -3'
miRNA:   3'- caUGCGGCaGCAUC-GCC-AUGagGACG- -5'
10295 5' -54.8 NC_002687.1 + 209058 0.67 0.984487
Target:  5'- -aACGUCGUCGUGGUcGUcgucgucaccGCUaCCUGUg -3'
miRNA:   3'- caUGCGGCAGCAUCGcCA----------UGA-GGACG- -5'
10295 5' -54.8 NC_002687.1 + 58594 0.67 0.9827
Target:  5'- -gACGCCaUCGU--CGGUGCUCCguuauucaugUGCa -3'
miRNA:   3'- caUGCGGcAGCAucGCCAUGAGG----------ACG- -5'
10295 5' -54.8 NC_002687.1 + 323450 0.67 0.9827
Target:  5'- --gUGCCGUUcuuGCGGUACUCgaGUg -3'
miRNA:   3'- cauGCGGCAGcauCGCCAUGAGgaCG- -5'
10295 5' -54.8 NC_002687.1 + 87545 0.67 0.980762
Target:  5'- gGUGCGCCcgacGUUGUGGCGGggguUACcgggCUGCa -3'
miRNA:   3'- -CAUGCGG----CAGCAUCGCC----AUGag--GACG- -5'
10295 5' -54.8 NC_002687.1 + 128700 0.67 0.980762
Target:  5'- uUAUGCCGUugaUGUAGCaGGaGCagagCCUGCu -3'
miRNA:   3'- cAUGCGGCA---GCAUCG-CCaUGa---GGACG- -5'
10295 5' -54.8 NC_002687.1 + 312827 0.68 0.976405
Target:  5'- aUACgGCCGUCGccGCGG-AUUCCagUGCu -3'
miRNA:   3'- cAUG-CGGCAGCauCGCCaUGAGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 263519 0.68 0.968574
Target:  5'- -gACGCCGcUCGUucgauuacuucGGCGGa--UCCUGUa -3'
miRNA:   3'- caUGCGGC-AGCA-----------UCGCCaugAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 146244 0.68 0.962423
Target:  5'- -gGCGCUGU-GUGGUGGUgaugagguACUCgUGCu -3'
miRNA:   3'- caUGCGGCAgCAUCGCCA--------UGAGgACG- -5'
10295 5' -54.8 NC_002687.1 + 248879 0.68 0.962423
Target:  5'- -cGCGCCGUCcaggagguGCGcGUugUCCUGa -3'
miRNA:   3'- caUGCGGCAGcau-----CGC-CAugAGGACg -5'
10295 5' -54.8 NC_002687.1 + 71756 0.69 0.947715
Target:  5'- -gACGCCGUau--GCGGUggcaccGCUCaCUGCg -3'
miRNA:   3'- caUGCGGCAgcauCGCCA------UGAG-GACG- -5'
10295 5' -54.8 NC_002687.1 + 63746 0.69 0.947715
Target:  5'- -cACGCCGaCG-GGUGGUAg-CCUGCg -3'
miRNA:   3'- caUGCGGCaGCaUCGCCAUgaGGACG- -5'
10295 5' -54.8 NC_002687.1 + 307526 0.69 0.947715
Target:  5'- -cACGCCG-CGUgauguggcAGCGGUACaUCCcgugUGCu -3'
miRNA:   3'- caUGCGGCaGCA--------UCGCCAUG-AGG----ACG- -5'
10295 5' -54.8 NC_002687.1 + 114067 0.7 0.91323
Target:  5'- gGU-CGCCGUCGUGGUGGUggcuaaaaaacuuACUUCgUGUu -3'
miRNA:   3'- -CAuGCGGCAGCAUCGCCA-------------UGAGG-ACG- -5'
10295 5' -54.8 NC_002687.1 + 325836 0.71 0.902153
Target:  5'- uUGCGuUCGUCGUGGCcgacACUCCUGUg -3'
miRNA:   3'- cAUGC-GGCAGCAUCGcca-UGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 71821 0.72 0.862258
Target:  5'- -aGCGCCGUCGUgcuAGCGGcACUCgUcGUc -3'
miRNA:   3'- caUGCGGCAGCA---UCGCCaUGAGgA-CG- -5'
10295 5' -54.8 NC_002687.1 + 255690 0.72 0.839705
Target:  5'- cUGCGCCaUCGUgucGGCuccGUACUCCUGUg -3'
miRNA:   3'- cAUGCGGcAGCA---UCGc--CAUGAGGACG- -5'
10295 5' -54.8 NC_002687.1 + 167499 0.72 0.839705
Target:  5'- aGUAUGUCGUCGUAggcGCGGUGugaUCCguUGCg -3'
miRNA:   3'- -CAUGCGGCAGCAU---CGCCAUg--AGG--ACG- -5'
10295 5' -54.8 NC_002687.1 + 81560 0.74 0.790155
Target:  5'- --uUGCCGgCGUAGCGGUGC-CCgagGCc -3'
miRNA:   3'- cauGCGGCaGCAUCGCCAUGaGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.