miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10296 3' -53.4 NC_002687.1 + 5670 0.66 0.996858
Target:  5'- ---cCGGUCGUCcuCGACcagucgagcgAGGCGCUg -3'
miRNA:   3'- cacaGCCAGCAGuuGCUG----------UCUGCGAa -5'
10296 3' -53.4 NC_002687.1 + 24363 0.66 0.995746
Target:  5'- aGUGacaUCGGUCGUCAcaAgGACGGcgaGCUUg -3'
miRNA:   3'- -CAC---AGCCAGCAGU--UgCUGUCug-CGAA- -5'
10296 3' -53.4 NC_002687.1 + 117860 0.66 0.99508
Target:  5'- -cGUCGuccUCGuUCGACG-CAGGCGCUg -3'
miRNA:   3'- caCAGCc--AGC-AGUUGCuGUCUGCGAa -5'
10296 3' -53.4 NC_002687.1 + 117830 0.66 0.99508
Target:  5'- -cGUCGuccUCGuUCGACG-CAGGCGCUg -3'
miRNA:   3'- caCAGCc--AGC-AGUUGCuGUCUGCGAa -5'
10296 3' -53.4 NC_002687.1 + 60665 0.67 0.993493
Target:  5'- -gGUUGGUUGUCAAcaagcaguuCGGCAGACaGCc- -3'
miRNA:   3'- caCAGCCAGCAGUU---------GCUGUCUG-CGaa -5'
10296 3' -53.4 NC_002687.1 + 199620 0.67 0.991522
Target:  5'- --aUCGGU-GUCAAccuCGACGGGCGCa- -3'
miRNA:   3'- cacAGCCAgCAGUU---GCUGUCUGCGaa -5'
10296 3' -53.4 NC_002687.1 + 135328 0.68 0.986182
Target:  5'- cGUGgccgCGGUCGagcaCGACGaacguGCAGACGCa- -3'
miRNA:   3'- -CACa---GCCAGCa---GUUGC-----UGUCUGCGaa -5'
10296 3' -53.4 NC_002687.1 + 204980 0.69 0.974799
Target:  5'- cGUGcgCGGUacagaagauuucacgCcGUCGGCGAUAGACGCUg -3'
miRNA:   3'- -CACa-GCCA---------------G-CAGUUGCUGUCUGCGAa -5'
10296 3' -53.4 NC_002687.1 + 237237 0.74 0.819049
Target:  5'- --uUCGGUCGUCAaugACGGCGGugGUg- -3'
miRNA:   3'- cacAGCCAGCAGU---UGCUGUCugCGaa -5'
10296 3' -53.4 NC_002687.1 + 122620 0.75 0.766323
Target:  5'- --cUUGG-CGUCGAUGACAGACGCUc -3'
miRNA:   3'- cacAGCCaGCAGUUGCUGUCUGCGAa -5'
10296 3' -53.4 NC_002687.1 + 25975 1.05 0.020734
Target:  5'- gGUGUCGGUCGUCAACGACAGACGCUUc -3'
miRNA:   3'- -CACAGCCAGCAGUUGCUGUCUGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.