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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10296 | 5' | -52 | NC_002687.1 | + | 249856 | 0.68 | 0.996764 |
Target: 5'- gUCGAACGUCC----UGUCCGC-CCUCa -3' miRNA: 3'- -GGUUUGCAGGuaacGCAGGUGaGGGG- -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 293750 | 0.67 | 0.998576 |
Target: 5'- -aAGAUGaUCU-UUGCGUCCuGCUCCCg -3' miRNA: 3'- ggUUUGC-AGGuAACGCAGG-UGAGGGg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 296776 | 0.69 | 0.994127 |
Target: 5'- gUCAAACGUCCGUUgaugagggucGUGUCCAUcgaggcaccggagUCCUg -3' miRNA: 3'- -GGUUUGCAGGUAA----------CGCAGGUG-------------AGGGg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 297972 | 0.68 | 0.99723 |
Target: 5'- aCAAACGcCC-UUGCGUugcggccgccaCCGCUUCCg -3' miRNA: 3'- gGUUUGCaGGuAACGCA-----------GGUGAGGGg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 303245 | 0.68 | 0.99723 |
Target: 5'- gCCAAGCGcCCGca--G-CCAUUCCCCu -3' miRNA: 3'- -GGUUUGCaGGUaacgCaGGUGAGGGG- -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 304873 | 0.66 | 0.999321 |
Target: 5'- gCCAGugGaCCGaacucgGgGUCCACaUUCCCg -3' miRNA: 3'- -GGUUugCaGGUaa----CgCAGGUG-AGGGG- -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 305780 | 0.69 | 0.99452 |
Target: 5'- uCCAAAUGUCUuugggcgaaaaacUGCGgCCGCUCCUg -3' miRNA: 3'- -GGUUUGCAGGua-----------ACGCaGGUGAGGGg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 311349 | 0.66 | 0.999443 |
Target: 5'- cUCGggUGUacaguguaUGUUGUGUCCACUUCCg -3' miRNA: 3'- -GGUuuGCAg-------GUAACGCAGGUGAGGGg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 330545 | 0.66 | 0.999443 |
Target: 5'- -uGAACGcCCAguUUGCGUCCGCUg--- -3' miRNA: 3'- ggUUUGCaGGU--AACGCAGGUGAgggg -5' |
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10296 | 5' | -52 | NC_002687.1 | + | 331156 | 0.69 | 0.993363 |
Target: 5'- gCCAuGCcUCCccaacugccGCGUCCGgUCCCCg -3' miRNA: 3'- -GGUuUGcAGGuaa------CGCAGGUgAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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