Results 41 - 50 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10296 | 5' | -52 | NC_002687.1 | + | 39559 | 0.69 | 0.993363 |
Target: 5'- uUCuguCGcCCAUUugacaaucGaCGUCCGCUCCCCu -3' miRNA: 3'- -GGuuuGCaGGUAA--------C-GCAGGUGAGGGG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 331156 | 0.69 | 0.993363 |
Target: 5'- gCCAuGCcUCCccaacugccGCGUCCGgUCCCCg -3' miRNA: 3'- -GGUuUGcAGGuaa------CGCAGGUgAGGGG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 296776 | 0.69 | 0.994127 |
Target: 5'- gUCAAACGUCCGUUgaugagggucGUGUCCAUcgaggcaccggagUCCUg -3' miRNA: 3'- -GGUUUGCAGGUAA----------CGCAGGUG-------------AGGGg -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 37551 | 0.69 | 0.994207 |
Target: 5'- aCCAAguuuACGUagaAUUGUGUCUGCUCUUCg -3' miRNA: 3'- -GGUU----UGCAgg-UAACGCAGGUGAGGGG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 305780 | 0.69 | 0.99452 |
Target: 5'- uCCAAAUGUCUuugggcgaaaaacUGCGgCCGCUCCUg -3' miRNA: 3'- -GGUUUGCAGGua-----------ACGCaGGUGAGGGg -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 40296 | 0.68 | 0.995636 |
Target: 5'- cCCuguCGUCCAccacaGUuucaUCCGCUCCCCa -3' miRNA: 3'- -GGuuuGCAGGUaa---CGc---AGGUGAGGGG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 31774 | 0.68 | 0.996764 |
Target: 5'- gCCGAAauUCCAUUGCuGUCUACaUCCa- -3' miRNA: 3'- -GGUUUgcAGGUAACG-CAGGUG-AGGgg -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 249856 | 0.68 | 0.996764 |
Target: 5'- gUCGAACGUCC----UGUCCGC-CCUCa -3' miRNA: 3'- -GGUUUGCAGGuaacGCAGGUGaGGGG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 225983 | 0.68 | 0.996764 |
Target: 5'- cUCGAcCGcCCAccggUGCGUCCuccACUCCuCCg -3' miRNA: 3'- -GGUUuGCaGGUa---ACGCAGG---UGAGG-GG- -5' |
|||||||
10296 | 5' | -52 | NC_002687.1 | + | 38462 | 0.66 | 0.999546 |
Target: 5'- --cGGCaUuuGUUGCGcCCGCUCCCa -3' miRNA: 3'- gguUUGcAggUAACGCaGGUGAGGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home