Results 41 - 50 of 50 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10296 | 5' | -52 | NC_002687.1 | + | 237246 | 0.7 | 0.98603 |
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Target: 5'- gCuuGCGUCCuUUGCGUCCAaccggggacCUCCa- -3' miRNA: 3'- gGuuUGCAGGuAACGCAGGU---------GAGGgg -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 70778 | 0.7 | 0.980576 |
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Target: 5'- -gAGACaacacCCAUUGuCG-CCACUCCCCg -3' miRNA: 3'- ggUUUGca---GGUAAC-GCaGGUGAGGGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 217013 | 0.7 | 0.980576 |
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Target: 5'- cCCuuAUcUCCGgcGUGUCCAC-CCCCa -3' miRNA: 3'- -GGuuUGcAGGUaaCGCAGGUGaGGGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 10753 | 0.71 | 0.978444 |
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Target: 5'- aCCAcggucGCGUCCGcUGCcuucUCCAC-CCCCg -3' miRNA: 3'- -GGUu----UGCAGGUaACGc---AGGUGaGGGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 134123 | 0.71 | 0.976145 |
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Target: 5'- cCCAccAUGUCCA---UGUCCuGCUCCCCa -3' miRNA: 3'- -GGUu-UGCAGGUaacGCAGG-UGAGGGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 212126 | 0.72 | 0.954831 |
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Target: 5'- aCCAAA-GUCCAUcUGCaG-CCACUCgCCCa -3' miRNA: 3'- -GGUUUgCAGGUA-ACG-CaGGUGAG-GGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 22035 | 0.73 | 0.946915 |
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Target: 5'- uCCuucAugGUCU----CGUCCGCUCCCCa -3' miRNA: 3'- -GGu--UugCAGGuaacGCAGGUGAGGGG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 151014 | 0.77 | 0.803035 |
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Target: 5'- aCCAAACGUCCAUcgaccguuuuccaUGCGUacuCUCCCg -3' miRNA: 3'- -GGUUUGCAGGUA-------------ACGCAgguGAGGGg -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 227085 | 0.78 | 0.731528 |
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Target: 5'- aCCcuGCGUCCAcacGCGUCCGCgUCCaCCg -3' miRNA: 3'- -GGuuUGCAGGUaa-CGCAGGUG-AGG-GG- -5' |
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| 10296 | 5' | -52 | NC_002687.1 | + | 25940 | 1.15 | 0.007879 |
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Target: 5'- uCCAAACGUCCAUUGCGUCCACUCCCCa -3' miRNA: 3'- -GGUUUGCAGGUAACGCAGGUGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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