miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 3' -54.4 NC_002687.1 + 172304 0.66 0.993158
Target:  5'- -gGCGGgGGUGGGACAGgaGGUGg-- -3'
miRNA:   3'- ugCGCCaCUACUCUGUCagCCACagu -5'
10297 3' -54.4 NC_002687.1 + 203991 0.66 0.993158
Target:  5'- cCGCGGUGuacAGACGGaUGGUGUa- -3'
miRNA:   3'- uGCGCCACuacUCUGUCaGCCACAgu -5'
10297 3' -54.4 NC_002687.1 + 281070 0.66 0.993158
Target:  5'- -gGCGGUGGUGAaaaaaGCGGUCGGgaaUCu -3'
miRNA:   3'- ugCGCCACUACUc----UGUCAGCCac-AGu -5'
10297 3' -54.4 NC_002687.1 + 310788 0.66 0.993158
Target:  5'- uACGCGGUGcUG-GACAGUgCGGgaagggggGUUg -3'
miRNA:   3'- -UGCGCCACuACuCUGUCA-GCCa-------CAGu -5'
10297 3' -54.4 NC_002687.1 + 107573 0.66 0.991135
Target:  5'- cGCGCGG-GAguAGGCAGaaagCGGUGUgCAc -3'
miRNA:   3'- -UGCGCCaCUacUCUGUCa---GCCACA-GU- -5'
10297 3' -54.4 NC_002687.1 + 101022 0.67 0.98725
Target:  5'- cCGaCGGUGA--AGGCGGcacCGGUGUCGa -3'
miRNA:   3'- uGC-GCCACUacUCUGUCa--GCCACAGU- -5'
10297 3' -54.4 NC_002687.1 + 23958 0.67 0.985699
Target:  5'- gGCGUGGUGGUGuGGCAG-CaGUGacgCAg -3'
miRNA:   3'- -UGCGCCACUACuCUGUCaGcCACa--GU- -5'
10297 3' -54.4 NC_002687.1 + 130723 0.67 0.985699
Target:  5'- -gGCGGUGGUGGugguGGCGGUggCGGUGgCGa -3'
miRNA:   3'- ugCGCCACUACU----CUGUCA--GCCACaGU- -5'
10297 3' -54.4 NC_002687.1 + 101480 0.68 0.975694
Target:  5'- -gGCGGUGGagcUGAGACGGUgGGUu--- -3'
miRNA:   3'- ugCGCCACU---ACUCUGUCAgCCAcagu -5'
10297 3' -54.4 NC_002687.1 + 224174 0.68 0.975694
Target:  5'- -gGCGGUGGcgGGGGCAGUgcUGGUGgCGg -3'
miRNA:   3'- ugCGCCACUa-CUCUGUCA--GCCACaGU- -5'
10297 3' -54.4 NC_002687.1 + 328809 0.7 0.941965
Target:  5'- aGCGCugacaucggaGGUGGUGAgGACAG-CGGgGUCAa -3'
miRNA:   3'- -UGCG----------CCACUACU-CUGUCaGCCaCAGU- -5'
10297 3' -54.4 NC_002687.1 + 167601 0.79 0.546667
Target:  5'- uCGUGGUGAaacucGAGGCGGUUGGUGUCc -3'
miRNA:   3'- uGCGCCACUa----CUCUGUCAGCCACAGu -5'
10297 3' -54.4 NC_002687.1 + 33078 1.08 0.01102
Target:  5'- uACGCGGUGAUGAGACAGUCGGUGUCAu -3'
miRNA:   3'- -UGCGCCACUACUCUGUCAGCCACAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.