miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10298 3' -50.6 NC_002687.1 + 168963 0.66 0.999863
Target:  5'- -gGAAAUgGUGgagGCCGCUCa-GGAGAu -3'
miRNA:   3'- gaCUUUGgCACa--CGGUGAGcaCUUCU- -5'
10298 3' -50.6 NC_002687.1 + 279642 0.66 0.99986
Target:  5'- uCUGGugGGCCGgugGUGCCggcaccaccugcuGCUCGUGGu-- -3'
miRNA:   3'- -GACU--UUGGCa--CACGG-------------UGAGCACUucu -5'
10298 3' -50.6 NC_002687.1 + 37094 0.66 0.999724
Target:  5'- uUGAAAUgGUGguUGCCAUg-GUGAAGGu -3'
miRNA:   3'- gACUUUGgCAC--ACGGUGagCACUUCU- -5'
10298 3' -50.6 NC_002687.1 + 38399 0.66 0.999724
Target:  5'- uCUGAAaacgGCCaGUGaaaauUGCauuGCUCGUGAAGGa -3'
miRNA:   3'- -GACUU----UGG-CAC-----ACGg--UGAGCACUUCU- -5'
10298 3' -50.6 NC_002687.1 + 263142 0.67 0.999042
Target:  5'- gUGAAugCGUGUGCCGUUCGa----- -3'
miRNA:   3'- gACUUugGCACACGGUGAGCacuucu -5'
10298 3' -50.6 NC_002687.1 + 279410 0.68 0.998612
Target:  5'- uUGAGGCCGcugGUGUCAC-CaGUGAAGc -3'
miRNA:   3'- gACUUUGGCa--CACGGUGaG-CACUUCu -5'
10298 3' -50.6 NC_002687.1 + 20721 0.69 0.99562
Target:  5'- -cGAAgGCCacGUGCUugUCGUGGAGGa -3'
miRNA:   3'- gaCUU-UGGcaCACGGugAGCACUUCU- -5'
10298 3' -50.6 NC_002687.1 + 7599 0.69 0.994147
Target:  5'- -aGAAGCCG-GUGCCAgUgGUGAc-- -3'
miRNA:   3'- gaCUUUGGCaCACGGUgAgCACUucu -5'
10298 3' -50.6 NC_002687.1 + 259690 0.72 0.97526
Target:  5'- uUGAu-CCGUGUGCCACUuccuagCGcGGAGAa -3'
miRNA:   3'- gACUuuGGCACACGGUGA------GCaCUUCU- -5'
10298 3' -50.6 NC_002687.1 + 43970 0.73 0.962667
Target:  5'- -gGAAACCaaucuuaaauacguGUGUGCCAa-CGUGAAGAa -3'
miRNA:   3'- gaCUUUGG--------------CACACGGUgaGCACUUCU- -5'
10298 3' -50.6 NC_002687.1 + 13184 0.74 0.930195
Target:  5'- -aGAGGgCGUGUGCCACUggagcgacacaGUGAGGAa -3'
miRNA:   3'- gaCUUUgGCACACGGUGAg----------CACUUCU- -5'
10298 3' -50.6 NC_002687.1 + 303578 0.79 0.766876
Target:  5'- uUGucGGCCGUGUGCCugUCGUGccuuGGAu -3'
miRNA:   3'- gACu-UUGGCACACGGugAGCACu---UCU- -5'
10298 3' -50.6 NC_002687.1 + 40341 1.09 0.02
Target:  5'- gCUGAAACCGUGUGCCACUCGUGAAGAc -3'
miRNA:   3'- -GACUUUGGCACACGGUGAGCACUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.