miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
103 5' -57.8 AC_000006.1 + 19743 0.66 0.450805
Target:  5'- -cUCGCGCaacugGGCCGCUUUUCGc-GGCu -3'
miRNA:   3'- gaAGCGCG-----CUGGCGAAGGGCauCCGu -5'
103 5' -57.8 AC_000006.1 + 15476 0.66 0.418504
Target:  5'- --cCGCGCG-CCGCgccgccacugcacccCCCGcAGGCAg -3'
miRNA:   3'- gaaGCGCGCuGGCGaa-------------GGGCaUCCGU- -5'
103 5' -57.8 AC_000006.1 + 12369 0.67 0.412783
Target:  5'- --cUGCGCgGGCUGUggggcgugcaggcgCCCGUGGGCGa -3'
miRNA:   3'- gaaGCGCG-CUGGCGaa------------GGGCAUCCGU- -5'
103 5' -57.8 AC_000006.1 + 10864 0.67 0.375019
Target:  5'- --aUGCGCGACUGCcggUUUCGggcGGGCAg -3'
miRNA:   3'- gaaGCGCGCUGGCGa--AGGGCa--UCCGU- -5'
103 5' -57.8 AC_000006.1 + 15607 0.67 0.36617
Target:  5'- --aCGgGCGugCGCgugCCCGUGcGCAc -3'
miRNA:   3'- gaaGCgCGCugGCGaa-GGGCAUcCGU- -5'
103 5' -57.8 AC_000006.1 + 34927 0.68 0.357465
Target:  5'- --cCGCGCGACCGUUagCCGUGcGUc -3'
miRNA:   3'- gaaGCGCGCUGGCGAagGGCAUcCGu -5'
103 5' -57.8 AC_000006.1 + 174 0.68 0.357465
Target:  5'- --cCGCGCGACCGUUagCCGUGcGUc -3'
miRNA:   3'- gaaGCGCGCUGGCGAagGGCAUcCGu -5'
103 5' -57.8 AC_000006.1 + 17425 0.68 0.340496
Target:  5'- -cUgGcCGCGGCCGCUUCUCGcccuucGGCGg -3'
miRNA:   3'- gaAgC-GCGCUGGCGAAGGGCau----CCGU- -5'
103 5' -57.8 AC_000006.1 + 15517 0.69 0.316151
Target:  5'- --gCGCGCGGCuCGCaucauggCCCGgcGGCc -3'
miRNA:   3'- gaaGCGCGCUG-GCGaa-----GGGCauCCGu -5'
103 5' -57.8 AC_000006.1 + 8314 0.72 0.186998
Target:  5'- -gUCGCG-GACgCGC-UCCCGgcGGCAg -3'
miRNA:   3'- gaAGCGCgCUG-GCGaAGGGCauCCGU- -5'
103 5' -57.8 AC_000006.1 + 16069 1.08 0.000363
Target:  5'- uCUUCGCGCGACCGCUUCCCGUAGGCAa -3'
miRNA:   3'- -GAAGCGCGCUGGCGAAGGGCAUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.