miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1030 5' -58.8 NC_000924.1 + 5698 0.66 0.552153
Target:  5'- uUCAgCCaGCCGCUGUGCUUUCAGUGGa -3'
miRNA:   3'- cAGUgGG-CGGCGGUGUGGAAGUCGUC- -5'
1030 5' -58.8 NC_000924.1 + 38637 0.66 0.552153
Target:  5'- cUCuCCUGCgccaGCCugGCCUuuUCAGCAu -3'
miRNA:   3'- cAGuGGGCGg---CGGugUGGA--AGUCGUc -5'
1030 5' -58.8 NC_000924.1 + 39657 0.67 0.449985
Target:  5'- gGUCGCCCccaccggGCCuGCCGCACCUguuucuccuuUCGGUc- -3'
miRNA:   3'- -CAGUGGG-------CGG-CGGUGUGGA----------AGUCGuc -5'
1030 5' -58.8 NC_000924.1 + 51128 0.68 0.42258
Target:  5'- cUUGCCCGUgGCaaCGCGCCgaCGGCAGa -3'
miRNA:   3'- cAGUGGGCGgCG--GUGUGGaaGUCGUC- -5'
1030 5' -58.8 NC_000924.1 + 51065 0.68 0.395312
Target:  5'- ---uUCCGuuGCCACAUCUUCAgagaacGCAGg -3'
miRNA:   3'- caguGGGCggCGGUGUGGAAGU------CGUC- -5'
1030 5' -58.8 NC_000924.1 + 50539 0.69 0.360772
Target:  5'- cGUCACCCucuGuuGCCAUAuCCgcaUCAGCAu -3'
miRNA:   3'- -CAGUGGG---CggCGGUGU-GGa--AGUCGUc -5'
1030 5' -58.8 NC_000924.1 + 49701 0.69 0.344308
Target:  5'- aUCACCC-CCuuucuaGCCACACCgcCAGCAa -3'
miRNA:   3'- cAGUGGGcGG------CGGUGUGGaaGUCGUc -5'
1030 5' -58.8 NC_000924.1 + 29178 0.7 0.328391
Target:  5'- uUCACCCGggcCCG-CGCACUUUCAGUAa -3'
miRNA:   3'- cAGUGGGC---GGCgGUGUGGAAGUCGUc -5'
1030 5' -58.8 NC_000924.1 + 30231 0.72 0.226387
Target:  5'- aUCACCa--C-CCACGCCUUCAGCAGu -3'
miRNA:   3'- cAGUGGgcgGcGGUGUGGAAGUCGUC- -5'
1030 5' -58.8 NC_000924.1 + 4079 0.74 0.183823
Target:  5'- -aCACCaaagCGCCGCCAUACCgguauugCAGCGGc -3'
miRNA:   3'- caGUGG----GCGGCGGUGUGGaa-----GUCGUC- -5'
1030 5' -58.8 NC_000924.1 + 56659 1.07 0.00062
Target:  5'- gGUCACCCGCCGCCACACCUUCAGCAGu -3'
miRNA:   3'- -CAGUGGGCGGCGGUGUGGAAGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.