miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 3' -58.1 NC_002687.1 + 295131 0.67 0.915436
Target:  5'- cCAUCGGCGgauuGCUUGCGGaaCUCGCGa- -3'
miRNA:   3'- -GUAGCUGUgc--CGAACGCC--GAGCGCga -5'
10300 3' -58.1 NC_002687.1 + 12260 0.67 0.925948
Target:  5'- gGUCGcgaaACugGGCgugacGCGGCU-GCGCa -3'
miRNA:   3'- gUAGC----UGugCCGaa---CGCCGAgCGCGa -5'
10300 3' -58.1 NC_002687.1 + 135619 0.67 0.920798
Target:  5'- aCcgCGACGCGGUgcaGCGGUUUG-GCa -3'
miRNA:   3'- -GuaGCUGUGCCGaa-CGCCGAGCgCGa -5'
10300 3' -58.1 NC_002687.1 + 208454 0.67 0.920798
Target:  5'- gGUCGACGUGGUgccuucGCGGgucguuCUCGCGCUu -3'
miRNA:   3'- gUAGCUGUGCCGaa----CGCC------GAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 325816 0.67 0.909864
Target:  5'- cCGUCGACG-GGuCUcGUGGCgggUGCGCUa -3'
miRNA:   3'- -GUAGCUGUgCC-GAaCGCCGa--GCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 180784 0.66 0.948537
Target:  5'- gCAUCGGCGaagaagaucuGCUUGCGuacaacgagguuGCUCGUGCUg -3'
miRNA:   3'- -GUAGCUGUgc--------CGAACGC------------CGAGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 200098 0.66 0.944017
Target:  5'- gGUCGACAugcucguuggugcCGGCgacGaCGGC-CGCGCg -3'
miRNA:   3'- gUAGCUGU-------------GCCGaa-C-GCCGaGCGCGa -5'
10300 3' -58.1 NC_002687.1 + 257965 0.66 0.930887
Target:  5'- gGUCGACAUGGUcaaCGGCaagcaaguacaUCGUGCUg -3'
miRNA:   3'- gUAGCUGUGCCGaacGCCG-----------AGCGCGA- -5'
10300 3' -58.1 NC_002687.1 + 211991 0.66 0.95243
Target:  5'- ---aGAUugGGCUUGCGGUguacgaGgGCg -3'
miRNA:   3'- guagCUGugCCGAACGCCGag----CgCGa -5'
10300 3' -58.1 NC_002687.1 + 23967 0.66 0.948936
Target:  5'- uGUCGugGCGGCgugguggUGUGGCagcagugacgcagaGCGCa -3'
miRNA:   3'- gUAGCugUGCCGa------ACGCCGag------------CGCGa -5'
10300 3' -58.1 NC_002687.1 + 224111 0.66 0.95243
Target:  5'- ---gGACGCGGUggcgGUGGCgcugGCGCUg -3'
miRNA:   3'- guagCUGUGCCGaa--CGCCGag--CGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.