miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10300 5' -52 NC_002687.1 + 223828 0.67 0.997023
Target:  5'- cGCAuCCCgaacUCCGCcaGCACCAcCGUCa- -3'
miRNA:   3'- -UGUuGGGa---AGGCG--UGUGGUuGUAGcu -5'
10300 5' -52 NC_002687.1 + 303811 0.67 0.996519
Target:  5'- gGCAGCaCCa-CC-CGCACCAACGUCa- -3'
miRNA:   3'- -UGUUG-GGaaGGcGUGUGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 114613 0.67 0.996519
Target:  5'- -uGAUCCUUuuGCGaaaGCCGACGUCc- -3'
miRNA:   3'- ugUUGGGAAggCGUg--UGGUUGUAGcu -5'
10300 5' -52 NC_002687.1 + 225225 0.67 0.996519
Target:  5'- uGCGugCCgaCCGUgccgGCGCCGccGCGUCGGc -3'
miRNA:   3'- -UGUugGGaaGGCG----UGUGGU--UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 4799 0.67 0.996519
Target:  5'- gGCu-CCCUgugcCCGCACugCGcgugcaccggaGCGUCGAu -3'
miRNA:   3'- -UGuuGGGAa---GGCGUGugGU-----------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 252155 0.67 0.995948
Target:  5'- uGCAGCCaguggaCgCGCGCACCGGaaaAUCGAg -3'
miRNA:   3'- -UGUUGGgaa---G-GCGUGUGGUUg--UAGCU- -5'
10300 5' -52 NC_002687.1 + 254919 0.67 0.995948
Target:  5'- uGCAGCuCCUcgUCUGCGCcAUCGuucagGCAUCGAu -3'
miRNA:   3'- -UGUUG-GGA--AGGCGUG-UGGU-----UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 312977 0.67 0.995948
Target:  5'- uCGACUCUUCCGCACcgGCCuuAACGaUGAc -3'
miRNA:   3'- uGUUGGGAAGGCGUG--UGG--UUGUaGCU- -5'
10300 5' -52 NC_002687.1 + 196472 0.68 0.995302
Target:  5'- uCAGCCCUUCCGgaGC-CCGACAg--- -3'
miRNA:   3'- uGUUGGGAAGGCg-UGuGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 222063 0.68 0.995302
Target:  5'- uCAGCCCUUCCGgaGC-CCGACAg--- -3'
miRNA:   3'- uGUUGGGAAGGCg-UGuGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 20637 0.68 0.995302
Target:  5'- uCAGCCCUUCCGgaGC-CCGACAg--- -3'
miRNA:   3'- uGUUGGGAAGGCg-UGuGGUUGUagcu -5'
10300 5' -52 NC_002687.1 + 300527 0.68 0.994574
Target:  5'- cAC-ACUCUcaCCGCGCACCAAgGUCa- -3'
miRNA:   3'- -UGuUGGGAa-GGCGUGUGGUUgUAGcu -5'
10300 5' -52 NC_002687.1 + 294199 0.68 0.994574
Target:  5'- gGCAcguGCCCUUCgUGuCGgGCCAACAuuUCGAu -3'
miRNA:   3'- -UGU---UGGGAAG-GC-GUgUGGUUGU--AGCU- -5'
10300 5' -52 NC_002687.1 + 87173 0.68 0.994574
Target:  5'- uGCAGCCCgguaacccCCGC-CA-CAACGUCGGg -3'
miRNA:   3'- -UGUUGGGaa------GGCGuGUgGUUGUAGCU- -5'
10300 5' -52 NC_002687.1 + 205226 0.68 0.993759
Target:  5'- cCGugCCUUCCGCAaaauCGCCuuccACGUCa- -3'
miRNA:   3'- uGUugGGAAGGCGU----GUGGu---UGUAGcu -5'
10300 5' -52 NC_002687.1 + 25071 0.68 0.992847
Target:  5'- uUAACCCUUCCGacgGCGgguCCuuCGUCGAu -3'
miRNA:   3'- uGUUGGGAAGGCg--UGU---GGuuGUAGCU- -5'
10300 5' -52 NC_002687.1 + 21005 0.68 0.992847
Target:  5'- aGCAAgCCUUCCGUcaGCCGACuUCa- -3'
miRNA:   3'- -UGUUgGGAAGGCGugUGGUUGuAGcu -5'
10300 5' -52 NC_002687.1 + 111500 0.68 0.99275
Target:  5'- aGCAACCCUUCgGUcaaguacggaugaACGCCAcgcACAggCGAc -3'
miRNA:   3'- -UGUUGGGAAGgCG-------------UGUGGU---UGUa-GCU- -5'
10300 5' -52 NC_002687.1 + 154191 0.68 0.992251
Target:  5'- cCAACgCUUCCGU-CGCCAaucuugguggaggagACGUCGAg -3'
miRNA:   3'- uGUUGgGAAGGCGuGUGGU---------------UGUAGCU- -5'
10300 5' -52 NC_002687.1 + 180331 0.68 0.991507
Target:  5'- --cACUCguagCCGCGCGCCAACAaagagggaauaacgUCGAu -3'
miRNA:   3'- uguUGGGaa--GGCGUGUGGUUGU--------------AGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.