Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10301 | 3' | -44.3 | NC_002687.1 | + | 72513 | 0.67 | 1 |
Target: 5'- uCUUGGCAucGCuAUCAA--GCGGCACAg- -3' miRNA: 3'- -GAAUCGU--UG-UAGUUcaUGCUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 240017 | 0.67 | 1 |
Target: 5'- gCUUAGCGGgAUCuuuGAGcACGucguACACAUCg -3' miRNA: 3'- -GAAUCGUUgUAG---UUCaUGC----UGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 119824 | 0.66 | 1 |
Target: 5'- --cAGCGACAcCAucacCGACGCGUCu -3' miRNA: 3'- gaaUCGUUGUaGUucauGCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 249328 | 0.66 | 1 |
Target: 5'- -cUGGCGguggacucaaaGCAUCGaaggaggGGUACGAUAcCAUCa -3' miRNA: 3'- gaAUCGU-----------UGUAGU-------UCAUGCUGU-GUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 20447 | 0.68 | 1 |
Target: 5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3' miRNA: 3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 196282 | 0.68 | 1 |
Target: 5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3' miRNA: 3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 221873 | 0.68 | 1 |
Target: 5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3' miRNA: 3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 103759 | 0.68 | 1 |
Target: 5'- cCUUGGCGaagGCAUCGAgGUACaggucgGACACAa- -3' miRNA: 3'- -GAAUCGU---UGUAGUU-CAUG------CUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 278589 | 0.69 | 1 |
Target: 5'- gUUAGCcuACGUCAAcgACGAUAUGUCa -3' miRNA: 3'- gAAUCGu-UGUAGUUcaUGCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 219339 | 0.69 | 1 |
Target: 5'- ---cGC-ACAcCAGGUACGAUACAUa -3' miRNA: 3'- gaauCGuUGUaGUUCAUGCUGUGUAg -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 295595 | 0.69 | 1 |
Target: 5'- --cGGCGauGCAUCGAGUACGccCACGa- -3' miRNA: 3'- gaaUCGU--UGUAGUUCAUGCu-GUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 259245 | 0.69 | 1 |
Target: 5'- --aAGCGugAUCAAGgaugacauuugACGACGCAa- -3' miRNA: 3'- gaaUCGUugUAGUUCa----------UGCUGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 281931 | 0.69 | 1 |
Target: 5'- -gUGGCAGCAUCGGucGCGGCAgGa- -3' miRNA: 3'- gaAUCGUUGUAGUUcaUGCUGUgUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 142937 | 0.7 | 0.999993 |
Target: 5'- -aUGGCcauccACAUCGAGUACGACGa--- -3' miRNA: 3'- gaAUCGu----UGUAGUUCAUGCUGUguag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 138317 | 0.71 | 0.999986 |
Target: 5'- --aGGCcGCGUCGGGUACGAa--GUCg -3' miRNA: 3'- gaaUCGuUGUAGUUCAUGCUgugUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 301806 | 0.71 | 0.999981 |
Target: 5'- cCUUAGC-ACGUCGAGaACGcACACGa- -3' miRNA: 3'- -GAAUCGuUGUAGUUCaUGC-UGUGUag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 282032 | 0.72 | 0.999964 |
Target: 5'- --aAGCAgaACA-CGAGUACGAgGCAUUg -3' miRNA: 3'- gaaUCGU--UGUaGUUCAUGCUgUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 315883 | 0.72 | 0.999952 |
Target: 5'- aUUGGUAGCAUCGacggggagGGgccCGACGCGUCc -3' miRNA: 3'- gAAUCGUUGUAGU--------UCau-GCUGUGUAG- -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 90194 | 0.72 | 0.999936 |
Target: 5'- --gAGCGACGUCGgcgAGUGCGACGa--- -3' miRNA: 3'- gaaUCGUUGUAGU---UCAUGCUGUguag -5' |
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10301 | 3' | -44.3 | NC_002687.1 | + | 164329 | 0.72 | 0.99989 |
Target: 5'- -aUGGCGACAcgGAGUACGAgACAg- -3' miRNA: 3'- gaAUCGUUGUagUUCAUGCUgUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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