miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10302 3' -54.8 NC_002687.1 + 24131 0.66 0.991879
Target:  5'- -aGCgGGGAGgUGCCuUUCGGGCGCa-- -3'
miRNA:   3'- agCG-UCCUCaACGG-AGGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 48151 0.66 0.986773
Target:  5'- aUGCcgacuGGGGGgacaGCCUCCGGugGCg-- -3'
miRNA:   3'- aGCG-----UCCUCaa--CGGAGGCUugCGauc -5'
10302 3' -54.8 NC_002687.1 + 12950 0.66 0.985176
Target:  5'- gUCGCAGGAGcgcaGCCgaUCacaGAGCGCcGGc -3'
miRNA:   3'- -AGCGUCCUCaa--CGG--AGg--CUUGCGaUC- -5'
10302 3' -54.8 NC_002687.1 + 304225 0.67 0.983435
Target:  5'- cUGCAGcuacGGUUG-CUCCGGGgGCUAGg -3'
miRNA:   3'- aGCGUCc---UCAACgGAGGCUUgCGAUC- -5'
10302 3' -54.8 NC_002687.1 + 90011 0.67 0.974901
Target:  5'- gUCGCGGGAGcaggUGCCguaagaUCGGGCaCUGGa -3'
miRNA:   3'- -AGCGUCCUCa---ACGGa-----GGCUUGcGAUC- -5'
10302 3' -54.8 NC_002687.1 + 279362 0.68 0.97234
Target:  5'- aCGCuGGAG-UGCCgUCCGGuuccacugcCGCUGGu -3'
miRNA:   3'- aGCGuCCUCaACGG-AGGCUu--------GCGAUC- -5'
10302 3' -54.8 NC_002687.1 + 16953 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 16622 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 16357 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 16026 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 15765 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 15168 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 14906 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 14641 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 14309 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 14048 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 15499 0.68 0.956682
Target:  5'- gUGUAGG--UUGCCUgCCGAGCGCa-- -3'
miRNA:   3'- aGCGUCCucAACGGA-GGCUUGCGauc -5'
10302 3' -54.8 NC_002687.1 + 259941 0.7 0.931042
Target:  5'- -gGCAGGAGUgccaGCCUCCauuauuuuGAaaACGCUGa -3'
miRNA:   3'- agCGUCCUCAa---CGGAGG--------CU--UGCGAUc -5'
10302 3' -54.8 NC_002687.1 + 309200 0.74 0.736901
Target:  5'- -aGCGGGAG--GCCUCCGGugGCa-- -3'
miRNA:   3'- agCGUCCUCaaCGGAGGCUugCGauc -5'
10302 3' -54.8 NC_002687.1 + 46189 0.97 0.047468
Target:  5'- cUCGCAGGAGUUGCCU-CGAACGCUAGg -3'
miRNA:   3'- -AGCGUCCUCAACGGAgGCUUGCGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.