miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10302 5' -57.2 NC_002687.1 + 277828 0.66 0.976843
Target:  5'- gCCGGG-GAUUGaUGACUUGCAgaGa -3'
miRNA:   3'- gGGCCCuCUAGCcACUGGACGUgaCg -5'
10302 5' -57.2 NC_002687.1 + 115540 0.66 0.974499
Target:  5'- cCCCGGuGGcAUCGGagcucUGGCgUGCGUUGCg -3'
miRNA:   3'- -GGGCCcUC-UAGCC-----ACUGgACGUGACG- -5'
10302 5' -57.2 NC_002687.1 + 135478 0.66 0.974011
Target:  5'- aCCCGu--GAUCGGUGACCcauuuuucaccgGCAUUGa -3'
miRNA:   3'- -GGGCccuCUAGCCACUGGa-----------CGUGACg -5'
10302 5' -57.2 NC_002687.1 + 209632 0.66 0.963393
Target:  5'- aCCCGGGuGGUCcccaGGUGcuCgUGCAgaGCc -3'
miRNA:   3'- -GGGCCCuCUAG----CCACu-GgACGUgaCG- -5'
10302 5' -57.2 NC_002687.1 + 172199 0.67 0.960158
Target:  5'- aCCUGGGccAGAUCcuggaGUGGCCgcuucUGCGuCUGCg -3'
miRNA:   3'- -GGGCCC--UCUAGc----CACUGG-----ACGU-GACG- -5'
10302 5' -57.2 NC_002687.1 + 133662 0.67 0.960158
Target:  5'- aCCCGGGAucuucCGGUGugCUu--CUGCa -3'
miRNA:   3'- -GGGCCCUcua--GCCACugGAcguGACG- -5'
10302 5' -57.2 NC_002687.1 + 279329 0.67 0.949288
Target:  5'- -gUGGGAGcAUCGcUGGgucugccccccCCUGCGCUGCc -3'
miRNA:   3'- ggGCCCUC-UAGCcACU-----------GGACGUGACG- -5'
10302 5' -57.2 NC_002687.1 + 97494 0.67 0.945266
Target:  5'- gUCGGGuuaGGGUCuugugGGUGA-CUGUACUGCu -3'
miRNA:   3'- gGGCCC---UCUAG-----CCACUgGACGUGACG- -5'
10302 5' -57.2 NC_002687.1 + 240107 0.68 0.94104
Target:  5'- gCUCaGGaAGAUCGGUGAuCCgugcaGCGCaUGCa -3'
miRNA:   3'- -GGGcCC-UCUAGCCACU-GGa----CGUG-ACG- -5'
10302 5' -57.2 NC_002687.1 + 156813 0.68 0.936608
Target:  5'- uCCCa-GAGGuauUCGGUGACUgaccccgGCAUUGCg -3'
miRNA:   3'- -GGGccCUCU---AGCCACUGGa------CGUGACG- -5'
10302 5' -57.2 NC_002687.1 + 79221 0.69 0.893711
Target:  5'- gCUCGGaAGAUUGGaaaccgacgUGGCC-GCGCUGCg -3'
miRNA:   3'- -GGGCCcUCUAGCC---------ACUGGaCGUGACG- -5'
10302 5' -57.2 NC_002687.1 + 137315 0.69 0.887433
Target:  5'- uCCCGGGAuuUUGaaGUGAagaCUGCugUGCc -3'
miRNA:   3'- -GGGCCCUcuAGC--CACUg--GACGugACG- -5'
10302 5' -57.2 NC_002687.1 + 309382 0.69 0.880959
Target:  5'- cCCCuGGAcGUCGGUGAguCCUG-ACUGUg -3'
miRNA:   3'- -GGGcCCUcUAGCCACU--GGACgUGACG- -5'
10302 5' -57.2 NC_002687.1 + 332500 0.69 0.880301
Target:  5'- uCCCuGGGGA-CGGUGAUCcacccuuUGCgGCUGCa -3'
miRNA:   3'- -GGGcCCUCUaGCCACUGG-------ACG-UGACG- -5'
10302 5' -57.2 NC_002687.1 + 135311 0.7 0.867439
Target:  5'- gCCGGGAGcUCGGUGuCCUGgAUc-- -3'
miRNA:   3'- gGGCCCUCuAGCCACuGGACgUGacg -5'
10302 5' -57.2 NC_002687.1 + 37231 0.71 0.822631
Target:  5'- --gGGGAGAUUGGUGACUauuuauCACUGUg -3'
miRNA:   3'- gggCCCUCUAGCCACUGGac----GUGACG- -5'
10302 5' -57.2 NC_002687.1 + 223590 0.72 0.78455
Target:  5'- uCCCGGGGGAggggggUGGUGGCC-GCAacacaccacguucuuCUGUg -3'
miRNA:   3'- -GGGCCCUCUa-----GCCACUGGaCGU---------------GACG- -5'
10302 5' -57.2 NC_002687.1 + 18869 0.73 0.699689
Target:  5'- cCuuGGGGGcgCGGUGGCCUcCuucuGCUGCu -3'
miRNA:   3'- -GggCCCUCuaGCCACUGGAcG----UGACG- -5'
10302 5' -57.2 NC_002687.1 + 43617 0.76 0.548143
Target:  5'- gCgGGGAGcGUCGGUcuaGACCUGCAgUGUa -3'
miRNA:   3'- gGgCCCUC-UAGCCA---CUGGACGUgACG- -5'
10302 5' -57.2 NC_002687.1 + 46156 1.13 0.003084
Target:  5'- uCCCGGGAGAUCGGUGACCUGCACUGCa -3'
miRNA:   3'- -GGGCCCUCUAGCCACUGGACGUGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.