miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 3' -46 NC_002687.1 + 230132 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230494 0.69 0.999983
Target:  5'- uACGUcgcAACACGAUUUggUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAuaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 229725 0.69 0.999976
Target:  5'- --gGUAGCACGGUgagaCGUGCUGgAu -3'
miRNA:   3'- uugCAUUGUGCUAaauaGCACGACgU- -5'
10303 3' -46 NC_002687.1 + 230080 0.69 0.999976
Target:  5'- --gGUAGCACGGUgaaaCGUGCUGgAu -3'
miRNA:   3'- uugCAUUGUGCUAaauaGCACGACgU- -5'
10303 3' -46 NC_002687.1 + 230686 0.69 0.999976
Target:  5'- --gGUAGCACGGUgaaaCGUGCUGgAu -3'
miRNA:   3'- uugCAUUGUGCUAaauaGCACGACgU- -5'
10303 3' -46 NC_002687.1 + 231103 0.69 0.999957
Target:  5'- uACGUcgcAACACGAUUUAgUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230372 0.69 0.999957
Target:  5'- uACGUcgcAACACGAUUUAgUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 230252 0.69 0.999957
Target:  5'- uACGUcgcAACACGAUUUAgUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 229646 0.69 0.999957
Target:  5'- uACGUcgcAACACGAUUUAgUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 51971 0.69 0.999957
Target:  5'- -uUGUcGCACGAUaUAUCGUGUuacguUGCAg -3'
miRNA:   3'- uuGCAuUGUGCUAaAUAGCACG-----ACGU- -5'
10303 3' -46 NC_002687.1 + 229888 0.69 0.999957
Target:  5'- uACGUcgcAACACGAUUUAgUGUGCUacacaGCAg -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCACGA-----CGU- -5'
10303 3' -46 NC_002687.1 + 305777 0.7 0.999943
Target:  5'- aGGCGUcACACGGUUguagaaAUCGUuugagcGCUGCAc -3'
miRNA:   3'- -UUGCAuUGUGCUAAa-----UAGCA------CGACGU- -5'
10303 3' -46 NC_002687.1 + 312903 0.7 0.999901
Target:  5'- gGACGUAACGCGAUc---CGUGaggGCAg -3'
miRNA:   3'- -UUGCAUUGUGCUAaauaGCACga-CGU- -5'
10303 3' -46 NC_002687.1 + 95960 0.7 0.999834
Target:  5'- aGACGUcaccgAGCuuGCGAUUUuUCGUGCUGUc -3'
miRNA:   3'- -UUGCA-----UUG--UGCUAAAuAGCACGACGu -5'
10303 3' -46 NC_002687.1 + 228951 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 53937 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 52847 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 228629 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 53551 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5'
10303 3' -46 NC_002687.1 + 53035 0.71 0.99973
Target:  5'- uACGUugcAGCACGAUUUAgUGaGCUGCAc -3'
miRNA:   3'- uUGCA---UUGUGCUAAAUaGCaCGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.