miRNA display CGI


Results 61 - 80 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 228456 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54240 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228327 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228972 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51624 0.99 0.069236
Target:  5'- gGUGCauAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54980 0.98 0.075074
Target:  5'- -uUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- acACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52888 0.97 0.090584
Target:  5'- gUGUGUAGCUCACcAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 229298 0.97 0.093034
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCaGCAg -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGaCGU- -5'
10303 5' -50.5 NC_002687.1 + 55257 0.97 0.093034
Target:  5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 53293 0.97 0.093034
Target:  5'- uUGUGCAuCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUcGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228393 0.97 0.093034
Target:  5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 55176 0.96 0.100768
Target:  5'- gUGUGCAGCUCACUAAAUCGU-CUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227646 0.94 0.134593
Target:  5'- cUGUGUAGCaCGCUGAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228198 0.93 0.157195
Target:  5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54836 0.93 0.157195
Target:  5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227768 0.93 0.157195
Target:  5'- gUGUGUAuCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUcGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228522 0.92 0.16974
Target:  5'- gUGUGUAGCUCACUAAAUCGU-CUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230618 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230738 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231469 0.88 0.271507
Target:  5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.