Results 101 - 119 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 5' | -50.5 | NC_002687.1 | + | 310980 | 0.68 | 0.997086 |
Target: 5'- cGUGCAGCUUACagGGggCGUGaaaccgUGCAg -3' miRNA: 3'- aCACGUCGAGUGa-UUuaGCACg-----ACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 328694 | 0.68 | 0.997086 |
Target: 5'- -uUGCucuCUCACUucgcacUCGUGCUGCAu -3' miRNA: 3'- acACGuc-GAGUGAuuu---AGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 139203 | 0.67 | 0.998789 |
Target: 5'- aUGUGguGCUgACaaucaucAAGUCGUGUauUGCAu -3' miRNA: 3'- -ACACguCGAgUGa------UUUAGCACG--ACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 231173 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230566 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGCUGAggCGUGCUGgAu -3' miRNA: 3'- acaCGUCGaGUGAUUuaGCACGACgU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 257352 | 0.67 | 0.998999 |
Target: 5'- gUGUGCAGCaUCGCcgcGAUCGcGaUUGCAg -3' miRNA: 3'- -ACACGUCG-AGUGau-UUAGCaC-GACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230812 | 0.67 | 0.998999 |
Target: 5'- -aUGCAGgUaCACggugAGA-CGUGCUGCAu -3' miRNA: 3'- acACGUCgA-GUGa---UUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 231417 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230324 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 311873 | 0.66 | 0.999178 |
Target: 5'- --cGCcGCUCGCUuccguuGUCGUGUgagGCAg -3' miRNA: 3'- acaCGuCGAGUGAuu----UAGCACGa--CGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229960 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230929 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 281154 | 0.66 | 0.999454 |
Target: 5'- uUGUGCAcCguaagCACUAGAU--UGCUGCAc -3' miRNA: 3'- -ACACGUcGa----GUGAUUUAgcACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 231295 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229838 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 231051 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 129142 | 0.66 | 0.999454 |
Target: 5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3' miRNA: 3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 52758 | 0.66 | 0.999559 |
Target: 5'- gUGUGUAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 146240 | 0.66 | 0.999646 |
Target: 5'- cUGUGUGGUggugaUGAGguacUCGUGCUGCAc -3' miRNA: 3'- -ACACGUCGagug-AUUU----AGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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