miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 54176 0.86 0.358138
Target:  5'- gGUGCguAGCUCACUAAAU-GUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAgCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54240 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54303 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54384 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54448 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54513 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54578 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54642 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54707 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54772 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54836 0.93 0.157195
Target:  5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54901 1.1 0.01483
Target:  5'- aUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54980 0.98 0.075074
Target:  5'- -uUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- acACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 55047 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 55112 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 55176 0.96 0.100768
Target:  5'- gUGUGCAGCUCACUAAAUCGU-CUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 55257 0.97 0.093034
Target:  5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 129142 0.66 0.999454
Target:  5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3'
miRNA:   3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5'
10303 5' -50.5 NC_002687.1 + 139203 0.67 0.998789
Target:  5'- aUGUGguGCUgACaaucaucAAGUCGUGUauUGCAu -3'
miRNA:   3'- -ACACguCGAgUGa------UUUAGCACG--ACGU- -5'
10303 5' -50.5 NC_002687.1 + 146240 0.66 0.999646
Target:  5'- cUGUGUGGUggugaUGAGguacUCGUGCUGCAc -3'
miRNA:   3'- -ACACGUCGagug-AUUU----AGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.