Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 5' | -50.5 | NC_002687.1 | + | 228844 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228909 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 228972 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229038 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229103 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229168 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229233 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229298 | 0.97 | 0.093034 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCaGCAg -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGaCGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229769 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAGUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229838 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229890 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 229960 | 0.66 | 0.999454 |
Target: 5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230012 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230132 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230254 | 0.88 | 0.271507 |
Target: 5'- cUGUGUAGCaCACUAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230324 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUgAUUUaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230383 | 0.81 | 0.611233 |
Target: 5'- gGUGCuGCUgugucgcaCACUAAGUCGUGUUGCGa -3' miRNA: 3'- aCACGuCGA--------GUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230446 | 0.76 | 0.858794 |
Target: 5'- --gGUAGCaCGCUGAggCGUGCUGCAu -3' miRNA: 3'- acaCGUCGaGUGAUUuaGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230498 | 0.8 | 0.672981 |
Target: 5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3' miRNA: 3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 230566 | 0.67 | 0.998999 |
Target: 5'- --gGUAGCaCGCUGAggCGUGCUGgAu -3' miRNA: 3'- acaCGUCGaGUGAUUuaGCACGACgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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