miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 228715 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228650 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228585 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228522 0.92 0.16974
Target:  5'- gUGUGUAGCUCACUAAAUCGU-CUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228519 0.7 0.982681
Target:  5'- -uUGCAGUUCGaUAAAUCGUGUuacguUGCAg -3'
miRNA:   3'- acACGUCGAGUgAUUUAGCACG-----ACGU- -5'
10303 5' -50.5 NC_002687.1 + 228456 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228393 0.97 0.093034
Target:  5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228327 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228263 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228198 0.93 0.157195
Target:  5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228132 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228067 1.1 0.015248
Target:  5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 228003 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227938 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227873 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227833 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227768 0.93 0.157195
Target:  5'- gUGUGUAuCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUcGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 227646 0.94 0.134593
Target:  5'- cUGUGUAGCaCGCUGAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGaGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 157844 0.8 0.642143
Target:  5'- cGUGCAGUUCAgUGGGUCGUuCUGCGc -3'
miRNA:   3'- aCACGUCGAGUgAUUUAGCAcGACGU- -5'
10303 5' -50.5 NC_002687.1 + 146240 0.66 0.999646
Target:  5'- cUGUGUGGUggugaUGAGguacUCGUGCUGCAc -3'
miRNA:   3'- -ACACGUCGagug-AUUU----AGCACGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.