Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10303 | 5' | -50.5 | NC_002687.1 | + | 139203 | 0.67 | 0.998789 |
Target: 5'- aUGUGguGCUgACaaucaucAAGUCGUGUauUGCAu -3' miRNA: 3'- -ACACguCGAgUGa------UUUAGCACG--ACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 129142 | 0.66 | 0.999454 |
Target: 5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3' miRNA: 3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55257 | 0.97 | 0.093034 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUcCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55176 | 0.96 | 0.100768 |
Target: 5'- gUGUGCAGCUCACUAAAUCGU-CUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55112 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 55047 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54980 | 0.98 | 0.075074 |
Target: 5'- -uUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- acACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54901 | 1.1 | 0.01483 |
Target: 5'- aUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54836 | 0.93 | 0.157195 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUcCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCAcGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54772 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54707 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54642 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54578 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54513 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54448 | 1.06 | 0.026552 |
Target: 5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54384 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54303 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54240 | 0.99 | 0.069236 |
Target: 5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54176 | 0.86 | 0.358138 |
Target: 5'- gGUGCguAGCUCACUAAAU-GUGCUGCAa -3' miRNA: 3'- aCACG--UCGAGUGAUUUAgCACGACGU- -5' |
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10303 | 5' | -50.5 | NC_002687.1 | + | 54111 | 1.1 | 0.015248 |
Target: 5'- gUGUGCAGCUCACUAAAUCGUGCUGCAa -3' miRNA: 3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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