miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10303 5' -50.5 NC_002687.1 + 51624 0.99 0.069236
Target:  5'- gGUGCauAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 54240 0.99 0.069236
Target:  5'- gGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- aCACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 51479 1 0.058845
Target:  5'- gUGUGCguAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACG--UCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 53465 1.06 0.026552
Target:  5'- gUGUGUAGCUCACUAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 52888 0.97 0.090584
Target:  5'- gUGUGUAGCUCACcAAAUCGUGCUGCAa -3'
miRNA:   3'- -ACACGUCGAGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230132 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231051 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231295 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230812 0.67 0.998999
Target:  5'- -aUGCAGgUaCACggugAGA-CGUGCUGCAu -3'
miRNA:   3'- acACGUCgA-GUGa---UUUaGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230566 0.67 0.998999
Target:  5'- --gGUAGCaCGCUGAggCGUGCUGgAu -3'
miRNA:   3'- acaCGUCGaGUGAUUuaGCACGACgU- -5'
10303 5' -50.5 NC_002687.1 + 257352 0.67 0.998999
Target:  5'- gUGUGCAGCaUCGCcgcGAUCGcGaUUGCAg -3'
miRNA:   3'- -ACACGUCG-AGUGau-UUAGCaC-GACGU- -5'
10303 5' -50.5 NC_002687.1 + 139203 0.67 0.998789
Target:  5'- aUGUGguGCUgACaaucaucAAGUCGUGUauUGCAu -3'
miRNA:   3'- -ACACguCGAgUGa------UUUAGCACG--ACGU- -5'
10303 5' -50.5 NC_002687.1 + 230446 0.76 0.858794
Target:  5'- --gGUAGCaCGCUGAggCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUGAUUuaGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230498 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230859 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 230981 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231103 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231225 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 231347 0.8 0.672981
Target:  5'- cUGUGUAGCaCACcAAAUCGUGUUGCGa -3'
miRNA:   3'- -ACACGUCGaGUGaUUUAGCACGACGU- -5'
10303 5' -50.5 NC_002687.1 + 157844 0.8 0.642143
Target:  5'- cGUGCAGUUCAgUGGGUCGUuCUGCGc -3'
miRNA:   3'- aCACGUCGAGUgAUUUAGCAcGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.